Team:Warsaw/Calendar-Main/6 October 2008

From 2008.igem.org

(Difference between revisions)
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<ol><li> Colony <a href="https://2008.igem.org/wiki/index.php?title=Wiki/Team:Warsaw/protocols#pcr">PCR</a> with <a href="https://2008.igem.org/Wiki/Team:Warsaw/primers#LinLSXNE">LinLSXNE</a> and <a href="https://2008.igem.org/Wiki/Team:Warsaw/primers#AlphaPSpe">AlphaPSpe</a>
<ol><li> Colony <a href="https://2008.igem.org/wiki/index.php?title=Wiki/Team:Warsaw/protocols#pcr">PCR</a> with <a href="https://2008.igem.org/Wiki/Team:Warsaw/primers#LinLSXNE">LinLSXNE</a> and <a href="https://2008.igem.org/Wiki/Team:Warsaw/primers#AlphaPSpe">AlphaPSpe</a>
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  primers on colonies from plates with transformations <a href=http://partsregistry.org/wiki/index.php?title=Part:pSB1A3>pSB1A3</a>+ <a href=http://partsregistry.org/Part:BBa_K103009>linker_alpha (BBa_K103009)</a> (annealing temperature - 55&deg;C,60 s of elongation step). No visible bands for proper product.</li>
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  primers on colonies from plates with transformations <a href=http://partsregistry.org/wiki/index.php?title=Part:pSB1A3>pSB1A3</a>+ <a href=http://partsregistry.org/Part:BBa_K103009>linker_alpha (BBa_K103009)</a> (annealing temperature - 55&deg;C,60 s of elongation step). No visible bands for proper product (<a href="https://2008.igem.org/Team:Warsaw/Calendar-Main/6_October_2008#fig1">Fig. 1.</a>).</li>
<li>Inoculation of some colonies which grown on plate - <a href=http://partsregistry.org/Part:pSB2K3>pSB2K3</a> + <a href=http://partsregistry.org/Part:BBa_K103009>linker_alpha (BBa_K103009)</a> to liquid LB + kanamycin. </li></ol>
<li>Inoculation of some colonies which grown on plate - <a href=http://partsregistry.org/Part:pSB2K3>pSB2K3</a> + <a href=http://partsregistry.org/Part:BBa_K103009>linker_alpha (BBa_K103009)</a> to liquid LB + kanamycin. </li></ol>
<a name="fig1"><img src="https://static.igem.org/mediawiki/2008/6/66/Kolonijny_alfa.jpg"></a>
<a name="fig1"><img src="https://static.igem.org/mediawiki/2008/6/66/Kolonijny_alfa.jpg"></a>
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<var><b>Fig. 15.</b>Kolonijny_alfa.jpg </var>
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<var><b>Fig. 1.</b>Colony PCR with LinLSXNE and AlphaPSpe. Lack of expected 400 bp product.(Kolonijny_alfa.jpg </var>
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<li> Colony <a href="https://2008.igem.org/wiki/index.php?title=Wiki/Team:Warsaw/protocols#pcr">PCR</a> with <a href="https://2008.igem.org/Wiki/Team:Warsaw/primers#OmpaL_N">OmpaL_N</a> and <a href="https://2008.igem.org/Wiki/Team:Warsaw/primers#OmpaP_link">OmpaP_link</a>
<li> Colony <a href="https://2008.igem.org/wiki/index.php?title=Wiki/Team:Warsaw/protocols#pcr">PCR</a> with <a href="https://2008.igem.org/Wiki/Team:Warsaw/primers#OmpaL_N">OmpaL_N</a> and <a href="https://2008.igem.org/Wiki/Team:Warsaw/primers#OmpaP_link">OmpaP_link</a>
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  primers on colonies from plates with transformations <a href=http://partsregistry.org/Part:BBa_I739204>pACYC177</a> + <a href=http://partsregistry.org/Part:BBa_K103016>OmpA-linker-omega-linker (BBa_K103016)</a> (annealing temperature - 55&deg;C,90 s of elongation step). No visible bands for proper product.</li>
+
  primers on colonies from plates with transformations <a href=http://partsregistry.org/Part:BBa_I739204>pACYC177</a> + <a href=http://partsregistry.org/Part:BBa_K103016>OmpA-linker-omega-linker (BBa_K103016)</a> (annealing temperature - 55&deg;C,90 s of elongation step). No visible bands for proper product (<a href="https://2008.igem.org/Team:Warsaw/Calendar-Main/6_October_2008#fig2">Fig. 2.</a>).</li>
<li>Inoculation of some colonies which grown on plate transformation: <a href=http://partsregistry.org/Part:BBa_I739204>pACYC177</a> + <a href=http://partsregistry.org/Part:BBa_K103016>OmpA-linker-omega-linker (BBa_K103016)</a> to liquid LB + kanamycin. </li></ol>
<li>Inoculation of some colonies which grown on plate transformation: <a href=http://partsregistry.org/Part:BBa_I739204>pACYC177</a> + <a href=http://partsregistry.org/Part:BBa_K103016>OmpA-linker-omega-linker (BBa_K103016)</a> to liquid LB + kanamycin. </li></ol>
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<a name="fig1"><img src="https://static.igem.org/mediawiki/2008/c/ce/Kolonijny_ompa_01_10_2008.jpg"></a>
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<a name="fig2"><img src="https://static.igem.org/mediawiki/2008/c/ce/Kolonijny_ompa_01_10_2008.jpg"></a>
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<var><b>Fig. 16.</b>Kolonijny_ompa_01_10_2008.jpg </var>
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<var><b>Fig. 2.</b>Colony PCR with OmpaL_N and OmpaP_link. Lack of expected 350 bp product. </var>
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<ol>
<ol>
<li> <a href="https://2008.igem.org/Wiki/Team:Warsaw/protocols#digest">Digest</a> of <a href=http://partsregistry.org/wiki/index.php?title=Part:pSB1A3>pSB1A3</a> plasmid with XbaI and PstI (Tango buffer). <a href="https://2008.igem.org/wiki/index.php?title=Wiki/Team:Warsaw/protocols#removing">Dephosphorylation</a> (CIAP) of plasmid.</li>
<li> <a href="https://2008.igem.org/Wiki/Team:Warsaw/protocols#digest">Digest</a> of <a href=http://partsregistry.org/wiki/index.php?title=Part:pSB1A3>pSB1A3</a> plasmid with XbaI and PstI (Tango buffer). <a href="https://2008.igem.org/wiki/index.php?title=Wiki/Team:Warsaw/protocols#removing">Dephosphorylation</a> (CIAP) of plasmid.</li>
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<li> Gel electrophoresis and <a href="https://2008.igem.org/wiki/index.php?title=Wiki/Team:Warsaw/protocols#DNA_isolation_from_agarose_gel">gel-out</a> of proper band - 2200 bp.</li>
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<li> Gel electrophoresis (<a href="https://2008.igem.org/Team:Warsaw/Calendar-Main/6_October_2008#fig3">Fig. 3.</a>) and <a href="https://2008.igem.org/wiki/index.php?title=Wiki/Team:Warsaw/protocols#DNA_isolation_from_agarose_gel">gel-out</a> of proper band - 2200 bp.</li>
</ol>
</ol>
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<a name="fig1"><img src="https://static.igem.org/mediawiki/2008/4/49/Go_05_10_2008.jpg"></a>
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<a name="fig3"><img src="https://static.igem.org/mediawiki/2008/4/49/Go_05_10_2008.jpg"></a>
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<var><b>Fig. 8.</b>Go_05_10_2008.jpg </var>
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<var><b>Fig. 3.</b>Digest of pSB1A3.<br>
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1. Marker<br>
 +
2. pSB1A3<br> </var>

Revision as of 20:13, 28 October 2008

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Preparation of linker_alpha (BBa_K103009)

Michał K.

  1. Colony PCR with LinLSXNE and AlphaPSpe primers on colonies from plates with transformations pSB1A3+ linker_alpha (BBa_K103009) (annealing temperature - 55°C,60 s of elongation step). No visible bands for proper product (Fig. 1.).
  2. Inoculation of some colonies which grown on plate - pSB2K3 + linker_alpha (BBa_K103009) to liquid LB + kanamycin.
Fig. 1.Colony PCR with LinLSXNE and AlphaPSpe. Lack of expected 400 bp product.(Kolonijny_alfa.jpg

Preparation of linker_omega (BBa_K103013)

Michał K.

Inoculation of some colonies which grown on plate - pSB2K3 + linker_omega (BBa_K103013) to liquid LB + kanamycin.

Preparation of OmpA-linker-omega-linker (BBa_K103016)

Michał K.

  1. Colony PCR with OmpaL_N and OmpaP_link primers on colonies from plates with transformations pACYC177 + OmpA-linker-omega-linker (BBa_K103016) (annealing temperature - 55°C,90 s of elongation step). No visible bands for proper product (Fig. 2.).
  2. Inoculation of some colonies which grown on plate transformation: pACYC177 + OmpA-linker-omega-linker (BBa_K103016) to liquid LB + kanamycin.
Fig. 2.Colony PCR with OmpaL_N and OmpaP_link. Lack of expected 350 bp product.

Preparation of vector for pT7 constructs

Michał K.

Overnight selfligation of pET15b+OmpA_omega (with removed XbaI).

Preparation of OmpA_linker_omega_linker under Plac (BBa_K103018)

Michał K.

Overnight ligation of isolated DNA fragments pSB2K3 (from 1 October) + OmpA_linker_omega_linker under Plac (BBa_K103018) (without EcoRI site).

Preparation of AID(BBa_K103001)

Michał K.

  1. Digest of pSB1A3 plasmid with XbaI and PstI (Tango buffer). Dephosphorylation (CIAP) of plasmid.
  2. Gel electrophoresis (Fig. 3.) and gel-out of proper band - 2200 bp.
Fig. 3.Digest of pSB1A3.
1. Marker
2. pSB1A3