Team:PennState

Welcome to the Penn State iGEM 2008 team website. We have been working hard at a few different projects for this year's competition. Starting this summer we began working trying to create different types of biosensors that use human nuclear hormone receptors to recognize potentially harmful ligands. We also have been finishing up one of last year's projects which is amied at more reaching efficent bioproduction by altering how E. Coli selects between utilizing 5 and 6 carbon sugars. Please explore our website to find out more about us and our projects!

If there are any questions or comments about the information on this site please contact us at gjt5001@psu.edu.

Hormone Prescreening E. coli

Our project aims to construct a bio sensor which will ultimately serve as a pre screening tool to detect the presence of phthalates in water sample. Recently phthalates have been shown to cause negative health effect in humans; some phthalates are even though to be carcinogenic. Analytical detection methods for these compounds are compound specific as well as very costly. Having a simple, and cheep tool to screen for phthalates as a general class of compounds would eliminate some of the cost and time involved in current detection methods.

We use the natural human nuclear hormone receptor protein that recognizes phthalates as an agonist (hPPARα), and expressing it heterologously in Escherichia Coli. Because of the complexity of this mammalian protein, expressing it in a prokaryote is difficult. We have two different strategies to express hPPARα and using it to detect phthalates in E. Coli.

Smart Fold Reporter

Smart Fold Reporter is the subproject for the first strategy we are trying to express hPPARalpha in E. coli. This project uses altered growth conditions such that this nuclear hormone receptor protein can be successfully epressed and used to transcriptionally report for the presence of phthalates.

Nuclear Fusion

Nuclear Fusion is our second approach to constructing a phthalate detection system in E. coli. In this project we use just the ligand binding domain of hPPARalpha fused to thymidylate synthase (TS). Binding of the phthalate ligand to this chimeric protein activates TS. When this construct is placed in a TS diffident strain, only E. coli in the presence of a hPPARalpha agonist will survive.

Diauxie Elimination E. coli

[img] Cellulosic biomass is an aboundant and inexpensive energy source that is ideal for bioproduction. A potential problem with the use of biomass for things such as ethanol production is that it is comprised of both glucose and xylose in relitivly equal ratios. Bacteria such as E. coli preferentially use glucose before any other sugar, meaning that the xlyose in the biomass is not utilized.

In this projcet we attempt to eliminate this phenomenon called diaxie by getting our cells to utilize both sugars at the same time. Solving this problem will lead to more efficent use of cellulosic biomass including moving towards the future of bioproduction: continous processes.

Quick Links

Table of our Contributions to the Registry

Interactive E. coLisa Schematic

The University of Calgary

Obrien Centre for the BHSC

Drew Endy On Synthetic Biology

Home	The Team	The Project	Parts Submitted to the Registry	Modeling	Notebook

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            <td style="padding-top:30px; padding-right:30px" valign="top" width="45%"><span style="font-size:18px">Smart Fold Reporter</span>
              <hr />
-             <div style="float:left; margin:5px;"> <img src="picture here" alt="name it" /> </div>
+             <img src="picture here" alt="[img]" style="float:left; margin:5px;"/>
              <p> <em>Smart Fold Reporter</em> is the subproject for the first strategy we are trying to express hPPARalpha in <em>E. coli</em>. This project uses altered growth conditions such that this nuclear hormone receptor protein can be successfully epressed and used to transcriptionally report for the presence of phthalates.</p></td>
            <td style="padding-top:30px; padding-right:30px" valign="top" width="45%"><span style="font-size:18px">Nuclear Fusion</span>
              <hr />
-             <div style="float:left; margin:5px;"> <img src="picture here" alt="name it" /> </div>
+             <img src="picture here" alt="[img]" style="float:left; margin:5px;"/>
              <p> <em> Nuclear Fusion</em> is our second approach to constructing a phthalate detection system in <em> E. coli</em>. In this project we use just the ligand binding domain of hPPARalpha fused to thymidylate synthase (TS). Binding of the phthalate ligand to this chimeric protein activates TS. When this construct is placed in a TS diffident strain, only <em>E. coli</em> in the presence of a hPPARalpha agonist will survive. </p></td>
          </tr>
 <tr>
-       <td valign="top"><td style="padding-top:30px; padding-right:30px" valign="top" width="45%"><span style="font-size:18px">Diauxie Elimination <em>E. coli</em></span>
+       <td style="padding-top:30px; padding-right:30px" valign="top" width="45%"><span style="font-size:18px">Diauxie Elimination <em>E. coli</em></span>
        <hr />
-       <p>Cellulosic Biomass is an aboundant and inexpensive energy sourse that is ideal for bioproduction. A potential problem with the use of biomass for things such as ethanol production is that it is comprised of both glucose and xylose in relitivly equal ratios. Bacteria such as <em>E. coli</em> preferentially use glucose before any other sugar, meaning that the xlyose in the biomass is not utilized.</p>
+       <p><img src="picture here" alt="[img]" style="float:left; margin:5px;"/>Cellulosic biomass is an aboundant and inexpensive energy source that is ideal for bioproduction. A potential problem with the use of biomass for things such as ethanol production is that it is comprised of both glucose and xylose in relitivly equal ratios. Bacteria such as <em>E. coli</em> preferentially use glucose before any other sugar, meaning that the xlyose in the biomass is not utilized.</p>
        <p>In this projcet we attempt to eliminate this phenomenon called diaxie by getting our cells to utilize both sugars at the same time. Solving this problem will lead to more efficent use of cellulosic biomass including moving towards the future of bioproduction: continous processes.</p>
 </td>