Template:Team:UC Berkeley/Notebook/AL sequencing

From 2008.igem.org

(Difference between revisions)

Revision as of 09:49, 29 October 2008

[http://andersonlab.qb3.berkeley.edu/SeqLogTemplate.xls Excel Template for Sequencing Logs]

Read	Date	plasmid	Clone	Oligo	Result	File
AL001	6-16-2008	pBca1256-K112300	Clone #1	Oligo ca998	Perfect	AL001
AL002	6-16-2008	pBca1256-K112301	Clone #1	Oligo ca998	Perfect	AL002
AL003	6-16-2008	pBca1256-K112302	Clone #1	Oligo ca998	Perfect	AL003
AL004	6-16-2008	pBca1256-K112303	Clone #1	Oligo ca998	Point Mutation	AL004
AL005	6-16-2008	pBca1256-K112304	Clone #1	Oligo ca998	Perfect	AL005
AL006	6-16-2008	pBca1256-K112305	Clone #1	Oligo ca998	Bad Read	AL006
AL007	6-16-2008	pBca1256-K112306	Clone #1	Oligo ca998	Perfect	AL007
AL008	6-16-2008	pBca1256-K112307	Clone #1	Oligo ca998	Point Mutation	AL008
AL009	6-16-2008	pBca1256-K112308	Clone #1	Oligo ca998	Perfect	AL009
AL010	6-16-2008	pBca1256-K112309	Clone #1	Oligo ca998	Perfect	AL010
AL011	6-16-2008	pBca1256-K112310	Clone #1	Oligo ca998	Point Mutation	AL011
AL012	6-16-2008	pBca1256-K112311	Clone #1	Oligo ca998	Bad Read	AL012
AL013	6-16-2008	pBca1256-K112312	Clone #1	Oligo ca998	Perfect	AL013
AL014	6-16-2008	pBca1256-K112313	Clone #1	Oligo ca998	Point Mutation	AL014
AL015	6-16-2008	pBca1256-K112314	Clone #1	Oligo ca998	Other sequence	AL015
AL016	6-16-2008	pBca1256-K112315	Clone #1	Oligo ca998	Perfect	AL016
AL017	6-16-2008	pBca1256-K112316	Clone #1	Oligo ca998	Bad Read	AL017
AL018	6-16-2008	pBca1256-K112317	Clone #1	Oligo ca998	Perfect	AL018
AL019	6-16-2008	pBca1256-K112318	Clone #1	Oligo ca998	Perfect	AL019
AL020	6-16-2008	pBca1256-K112319	Clone #1	Oligo ca998	Other Sequence	AL020
AL021	6-16-2008	pBca1256-K112320	Clone #1	Oligo ca998	Short Read/Point Mutation	AL021
AL022	6-18-2008	pBca1256-K112303	Clone #2	Oligo ca998	Perfect	AL022
AL023	6-18-2008	pBca1256-K112305	Clone #2	Oligo ca998	Other sequence	AL023
AL024	6-18-2008	pBca1256-K112307	Clone #2	Oligo ca998	Perfect	AL024
AL025	6-18-2008	pBca1256-K112310	Clone #2	Oligo ca998	Other Sequence	AL025
AL026	6-18-2008	pBca1256-K112311	Clone #2	Oligo ca998	Other Sequence	AL026
AL027	6-18-2008	pBca1256-K112313	Clone #2	Oligo ca998	Other Sequence	AL027
AL028	6-18-2008	pBca1256-K112314	Clone #2	Oligo ca998	Perfect	AL028
AL029	6-18-2008	pBca1256-K112316	Clone #2	Oligo ca998	Other Sequence	AL029
AL030	6-18-2008	pBca1256-K112319	Clone #2	Oligo ca998	Perfect	AL030
AL031	6-18-2008	pBca1256-K112320	Clone #2	Oligo ca998	Perfect	AL031
AL032	6-20-2008	pBca1256-K112305	Clone #3	Oligo ca998	Perfect	AL032
AL033	6-20-2008	pBca1256-K112310	Clone #3	Oligo ca998	Perfect	AL033
AL034	6-20-2008	pBca1256-K112311	Clone #3	Oligo ca998	Point Mutation and Deletion	AL034
AL035	6-20-2008	pBca1256-K112313	Clone #3	Oligo ca998	Point Mutation	AL035
AL036	6-20-2008	pBca1256-K112316	Clone #3	Oligo ca998	Other Sequence	AL036
AL037	6-24-2008	pBca1256-K112311	Clone #4	Oligo ca998	Point Mutation	AL037
AL038	6-24-2008	pBca1256-K112313	Clone #4	Oligo ca998	Perfect	AL038
AL039	6-24-2008	pBca1256-K112316	Clone #4	Oligo ca998	Point mutation in EcoRI site	AL039
AL040	6-24-2008	pBca1256-K112319	Clone #1	Oligo ca998	Perfect	AL040
AL041	6-24-2008	pBca1256-K112319	Clone #2	Oligo ca998	Perfect	AL041
AL042	6-26-2008	pBca1256-K112311	Clone #5	Oligo ca998	Deletion and point mutation	AL042
AL043	6-26-2008	pBca1256-K112311	Clone #6	Oligo ca998	Deletion	AL043
AL044	6-27-2008	pBca1256-K112311	Clone #7	Oligo ca998	Deletion	AL044
AL045	6-29-2008	pBca1256-K112311	Clone #8	Oligo ca998	Perfect	AL045
AL046	6-29-2008	pBca1256-K112311	Clone #9	Oligo ca998	Perfect	AL046
AL047	6-29-2008	pBca1256-K112311	Clone #10	Oligo ca998	Did not work	AL047
AL048	7-06-2008	K112321	Clone #1	Oligo ca998	Did not work	AL048
AL049	7-06-2008	K112321	Clone #2	Oligo ca998	Point Mutation in C-terminus	AL049
AL050	7-06-2008	K112322	Clone #1	Oligo ca998	Perfect	AL050
AL051	7-06-2008	K112322	Clone #2	Oligo ca998	Perfect	AL051
AL052			Jin's Sequence	Oligo ca998		AL052
AL053			Jin's Sequence	Oligo ca998		AL053
AL054	7-12-2008	K112323	Clone #1	Oligo ca998	Some Deletions/Point Mutation Possibly from sequencing	AL054
AL055	7-12-2008	K112323	Clone #2	Oligo ca998	Perfect	AL055
AL056	7-22-2008	K112319	Clone #3	Oligo ca998	Turn out to be ftsAz	AL056
AL057	7-19-2008	akl004	Clone #1	Oligo ca998	Lefty is a~pelB	AL057
AL058	7-19-2008		Clone #1	Oligo ca998 and g00101	Lefty is a~pelB	AL058
AL059	7-22-2008	akl008	Clone #1	Oligo ca998	no lefty part	AL059
AL060	7-22-2008	akl007	Clone #1	Oligo ca998	wrong K112607	AL060
AL061	7-22-2008	akl010	Clone #1	Oligo ca998	wrong K112607	AL061
AL062	7-22-2008	Bca1092 A/K	Clone #1	Oligo ca998	Perfect	AL062
AL063	7-23-2008	K112230 A/K	Clone #1	Oligo ca998	Sequence is a~pelB	AL063
AL064	7-23-2008	K112608	Clone #1	Oligo ca998	Perfect (but not what we want)	AL064
AL065	7-24-2008	Bca1109	Clone #1	Oligo ca998	Some Mutations but should still work	AL065
AL066	7-24-2008	pBCa1256-K112229	Clone #1	Oligo ca998	Perfect	AL066
AL067	7-25-2008	akl005	Clone #1	Oligo ca998	Multiple Templates	AL067
AL068	7-24-2008	akl009	Clone #1	Oligo ca998	Wrong rbs_lamB> righty could be rbs pelB	AL068
AL069	7-25-2008	Bca1106-A K/C	Clone #1	Oligo ca998	Bad Read	AL069
AL070	7-24-2008	akl008	Clone #2	Oligo ca998	{rbs_lamB>} wrong	AL070
AL071	7-25-2008	Bca1109	Clone #1	Oligo g00101	Perfect	AL071
AL072	7-25-2008	pBca1256-K112319	Clone #4	Oligo ca998	Perfect	AL072
AL073	7-25-2008	akl002	Clone #1	Oligo ca998	Perfect	AL073
AL074	7-26-2008	akl005	Clone #2	Oligo ca998 and g00101	Multiple Templates	AL074
AL075	7-29-2008	akl001	Clone #1	Oligo ca998 and g00101	Perfect	AL075
AL076	7-28-2008	akl013		Oligo ca998		AL076
AL077	7-27-2008	ig31		Oligo ca998		AL077
AL078	7-29-2008	akl003		Oligo ca998 and G00101	Mixed Inserts	AL078
AL079	7-31-2008	akl005		Oligo ca998 and G00101	Mixed inserts	AL079
AL080	7-31-2008	akl003		Oligo ca998		AL080
AL081	7-31-2008	akl005		Oligo ca998		AL081
AL082	8-1-2008			Oligo ca998		AL082
AL083	8-1-2008			Oligo ca998		AL083
AL084	8-1-2008			Oligo ca998		AL084
AL085	8-1-2008			Oligo ca998		AL085
AL086	8-1-2008			Oligo ca998		AL086
AL087	8-5-2008	ihfA		Oligo ca998	Perfect	AL087
AL088	8-5-2008	Bca1091 AC		Oligo ca998	Did not work	AL088
AL089	8-1-2008	K112121 CA		Oligo ca998	Perfect	AL089
AL090	8-5-2008	Bca1112 KA		Oligo ca998		AL090
AL091	8-5-2008	I716211 AK		Oligo ca998	Did not work	AL091
AL092	8-1-2008	K112232 KC		Oligo ca998	Perfect	AL092
AL093	8-2-2008			Oligo ca998		AL093
AL094	8-2-2008			Oligo ca998		AL094
AL095	8-2-2008			Oligo ca998		AL095
AL096	8-6-2008	I716211 AK		Oligo ca998	Did not work	AL096
AL097	8-5-2008	akl004		Oligo ca998	Perfect	AL097
AL098	8-5-2008	akl006		Oligo ca998	Perfect	AL098
AL099	8-5-2008	akl007		Oligo ca998	Missing righty	AL099
AL100	8-5-2008	akl008		Oligo ca998	Perfect	AL100
AL101	8-5-2008	akl009		Oligo ca998	Perfect	AL101
AL102	8-5-2008	akl010		Oligo ca998	Perfect	AL102
AL103	8-5-2008	pBca9145-akl071		Oligo ca998	Wrong Sequence	AL103
AL104	8-5-2008	pBca9145-akl072		Oligo ca998	Wrong Sequence	AL104
AL105	8-5-2008	akl069		Oligo ca998	Perfect	AL105
AL106	8-6-2008	akl019		Oligo ca998	Perfect	AL106
AL107	8-6-2008	akl003		Oligo ca998	Did not work	AL107
AL108	8-6-2008	akl005		Oligo ca998	Did not work	AL108
AL109	8-8-2008	akl018		Oligo ca998	Wrong	AL109
AL110	8-8-2008	akl070	Clone#1	Oligo ca998	Wrong	AL110
AL111	8-10-2008	akl070	Clone#2	Oligo ca998	Perfect	AL111
AL112	8-10-2008	akl043		Oligo ca998	Wrong Sequence	AL112
AL113	8-10-2008	akl056		Oligo ca998	Did not work	AL113
AL114	8-10-2008	akl057		Oligo ca998	Wrong Sequence	AL114
AL115	8-12-2008	pBca1256-I716211	Clone#1(stock plate)	Oligo ca998	Perfect	AL115
AL116	8-16-2008	akl071	Clone#1	Oligo ca998	deletion of righty	AL116
AL117	8-16-2008	akl071	Clone#2	Oligo ca998	deletion of lefty	AL117
AL118	8-16-2008	akl072	Clone#1	Oligo ca998	deletion of righty	AL118
AL119	8-16-2008	akl072	Clone#2	Oligo ca998	delection of righty	AL119
AL120	8-17-2008	akl074	Clone#1	Oligo ca998	hairpin	AL120
AL121	8-17-2008	akl074	Clone#2	Oligo ca998	hairpin	AL121
AL122	8-19-2008	bjh1230-2	Clone#1	Oligo ca998	Perfect	AL122
AL123	8-19-2008	bjh1231-2	Clone#1	Oligo ca998	Perfect	AL123
AL124	8-19-2008	bjh1232-2	CLone#1	Oligo ca998	Perfect	AL124
AL125	8-24-2008	akl007	Clone#1(AL28-A1)	Oligo ca998	Perfect	AL125
AL126	8-24-2008	akl007	Clone#2(AL28-A2)	Oligo ca998	Perfect	AL126
AL127	8-26-2008	akl018	Clone #	Oligo ca998	Perfect	AL127
AL128	8-31-2008	akl005-2	Clone #2	Oligo ca998 and g00101	Perfect	AL128
AL129	8-31-2008	akl005-3	Clone #3	Oligo ca998 and g00101	Perfect	AL129
AL130				Oligo ca998		AL130

@@ Line 155: / Line 155: @@
 |	AL075	||	7-29-2008	||	akl001			||	Clone #1	||	Oligo ca998 and g00101||Perfect			||	 [[Team:UC Berkeley/Notebook/AL/AL075 | AL075]]
 |-
-|	AL076	||	7-28-2008	||				||			||	Oligo ca998	||					||	 [[Team:UC Berkeley/Notebook/AL/AL076 | AL076]]
+|	AL076	||	7-28-2008	||	akl013			||			||	Oligo ca998	||					||	 [[Team:UC Berkeley/Notebook/AL/AL076 | AL076]]
 |-
-|	AL077	||	7-27-2008	||				||			||	Oligo ca998	||					||	 [[Team:UC Berkeley/Notebook/AL/AL077 | AL077]]
+|	AL077	||	7-27-2008	||	ig31			||			||	Oligo ca998	||					||	 [[Team:UC Berkeley/Notebook/AL/AL077 | AL077]]
 |-
-|	AL078	||	7-29-2008	||				||			||	Oligo ca998 and G00101||		Mixed Inserts		||	 [[Team:UC Berkeley/Notebook/AL/AL078 | AL078]]
+|	AL078	||	7-29-2008	||	akl003			||			||	Oligo ca998 and G00101||		Mixed Inserts		||	 [[Team:UC Berkeley/Notebook/AL/AL078 | AL078]]
 |-
-|	AL079	||	7-31-2008	||				||			||	Oligo ca998 and G00101||		Mixed inserts		||	 [[Team:UC Berkeley/Notebook/AL/AL079 | AL079]]
+|	AL079	||	7-31-2008	||	akl005			||			||	Oligo ca998 and G00101||		Mixed inserts		||	 [[Team:UC Berkeley/Notebook/AL/AL079 | AL079]]
 |-
-|	AL080	||	7-31-2008	||				||			||	Oligo ca998	||				||	 [[Team:UC Berkeley/Notebook/AL/AL080 | AL080]]
+|	AL080	||	7-31-2008	||	akl003			||			||	Oligo ca998	||				||	 [[Team:UC Berkeley/Notebook/AL/AL080 | AL080]]
+|-
+|	AL081	||	7-31-2008	||	akl005			||			||	Oligo ca998	||				||	 [[Team:UC Berkeley/Notebook/AL/AL081 | AL081]]
 |-
 |	AL082	||	8-1-2008	||				||			||	Oligo ca998	||					||	 [[Team:UC Berkeley/Notebook/AL/AL082 | AL082]]