GROUP 2: MATa Specific-promoters
Status report by Allison and Nate
Part no.: BBa_K110008
Part Description: MFA1 (L+R)
Part Location: in a labeled box, second shelf from the top, -20
degrees C refrigerator next to front door
Date: 7/10/08
PCR successful? Yes
[http://www.jhu.edu/iGEM/Group2:MATaSpecificPromoters/2008-7-22.BioBricks%208%20and%2016.Allison%20Suarez%20and%20Nate%20Sotuyo%20.html BioBricks 8 and 16]
[http://www.jhu.edu/iGEM/Group2:MATaSpecificPromoters/2008-7-22.BioBricks%208%20and%2016%20Using%20Constant%20Annealing.Allison%20Suarez%20and%20Nate%20Sotuyo%20.html BioBricks 8 and 16 Using Constant Annealing]
[http://www.jhu.edu/iGEM/Group2:MATaSpecificPromoters/2008-7-22.Short%202Way%20Stop,%20Alpha%20Promoters,%20&%20Sapphire%20FP.Allison%20Suarez%20and%20Nate%20Sotuyo%20.html Short 2Way Stop, Alpha Promoters, & Sapphire FP]
Cloning of PCR product successful: in progress
Sequencing of cloned PCR product successful: not done
Joining of validated part to adjacent part(s) status: not done
Problems to be solved: to be determined
Current status of this part: PCR was being troubleshooted, appeared to
have good results with regular PCR protocol (not touchdown) in which
there was a constant annealing temperature of 55 degrees C - see gel
Status report by Allison and Nate
Part no.: BBa_K110016
Part Description: Ste2 (R+L)
Part Location: in a labeled box, second shelf from the top, -20
degrees C refrigerator next to front door
Date: 7/10/08
PCR successful? Yes
[http://www.jhu.edu/iGEM/Group2:MATaSpecificPromoters/2008-7-22.BioBricks%208%20and%2016.Allison%20Suarez%20and%20Nate%20Sotuyo%20.html BioBricks 8 and 16]
[http://www.jhu.edu/iGEM/Group2:MATaSpecificPromoters/2008-7-22.BioBricks%208%20and%2016%20Using%20Constant%20Annealing.Allison%20Suarez%20and%20Nate%20Sotuyo%20.html BioBricks 8 and 16 Using Constant Annealing]
[http://www.jhu.edu/iGEM/Group2:MATaSpecificPromoters/2008-7-22.Short%202Way%20Stop,%20Alpha%20Promoters,%20&%20Sapphire%20FP.Allison%20Suarez%20and%20Nate%20Sotuyo%20.html Short 2Way Stop, Alpha Promoters, & Sapphire FP]
Cloning of PCR product successful: in progress
Sequencing of cloned PCR product successful: not done
Joining of validated part to adjacent part(s) status: not done
Problems to be solved: to be determined
Current status of this part: Both PCR protocols (touchdown and second
PCR with constant annealing temperature) produced product of the
correct size. BBa_K110016 was used as a control in the second PCR with
BBa_K110008.
Status report by Allison and Nate
Part no.: BBa_K110008
Part Description: MFA1 (L+R)
Part Location: same as above, plates are at 4 degrees refrigerator near front door
Date: 7/14/08
PCR successful? Yes
Cloning of PCR product of successful? There were mainly light blue colonies
(only a couple white colonies)
Sequencing of cloned PCR product successful: not done
Joining of validated part to adjacent part(s) status: not done
Problems to be solved: Ligation
Current status of this part: plates are at 4 degrees; another ligation/transformation
will be completed soon
Status report by Allison and Nate
Part no.: BBa_K110016
Part Description: Ste2 (R+L)
Part Location: in a labeled box, second shelf from the top, -20 degrees C refrigerator next to
front door; plates at 4 degrees
Date: 7/14/08
PCR successful? Yes
Cloning of PCR product successful: There were many blue colonies (similar to the plate of BB_K110008)
Sequencing of cloned PCR product successful: not done
Joining of validated part to adjacent part(s) status: not done
Problems to be solved: Ligation
Current status of this part: plates are at 4 degrees; another ligation/transformation
will be completed soon
Status report by Allison and Nate
Part no.: BBa_K110008
Part Description: MFA1 (L+R)
Part Location: same as above, plates are at 4 degrees refrigerator near front door
Date: 7/22/08
PCR successful? Yes
(BAD LINK)
Cloning of PCR product of successful? Yes (approx 60 white colonies between two plates)
Sequencing of cloned PCR product successful: not done
Joining of validated part to adjacent part(s) status: not done
Problems to be solved:
Current status of this part: 12 mini preps and the restriction digestion were completed;
preparing to send 3 samples to be sequenced
[http://www.jhu.edu/iGEM/Group2:MATaSpecificPromoters/2008-7-22.Restriction%20Digests%20of%20BBa_K1100...%2008%20&%2016.Allison%20Suarez%20and%20Nate%20Sotuyo%20.html Restriction Digests of BBa_K1100... 08 & 16]
Status report by Allison and Nate
Part no.: BBa_K110016
Part Description: Ste2 (R+L)
Part Location: in a labeled box, second shelf from the top, -20 degrees C refrigerator next to
front door; plates at 4 degrees
Date: 7/22/08
PCR successful? Yes
Cloning of PCR product successful: Yes (approx 20 white colonies on one plate)
Joining of validated part to adjacent part(s) status: not done
Problems to be solved:
Current status of this part: 12 mini preps and the restriction digestion were completed;
preparing to send 3 samples to be sequenced
[http://www.jhu.edu/iGEM/Group2:MATaSpecificPromoters/2008-7-22.Restriction%20Digests%20of%20BBa_K1100...%2008%20&%2016.Allison%20Suarez%20and%20Nate%20Sotuyo%20.html Restriction Digests of BBa_K1100... 08 & 16]
Date: July 29, 2008
Status report by: Allison and Nate
Part no.: BBa_K110008 -> BBa_K110016
Part Description: A promoters: MFA1 (L+R) and Ste2 (R+L), respectively.
Two samples of mini preps from MFA1 and Ste2 were sent off for sequencing at the end of last week.
Results will follow soon.
Date: August 5, 2008
Status report by: Allison and Nate
Part no.: BBa_K110008 -> BBa_K110016
Part Description: A promoters: MFA1 (L+R) and Ste2 (R+L), respectively.
Sequences were analyzed. BBa_K110016 had a perfect clone. Since there is not much
miniprep left, a transformation will be done to generate more clones with the
correct sequence. BBa_K110008 had one mutation; additional minipreps from other clones
are ready to send off for sequencing, although the DNA concentrations are low. Colonies
can be picked and overnight cultures grown
for another round of minipreps.
Date: August 12, 2008
Status report by: Allison and Nate
Part no.: BBa_K11008 -> BBa_K110016
Part Description: A promoters MFA1 (L+R) and Ste2 (R+L)
Two more minipreps were completed. DNA concentrations were much higher (>150 ng/ul).
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