Newcastle University Drylab/8 June 2008

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Newcastle University

GOLD MEDAL WINNER 2008

Home Team Original Aims Software Modelling Proof of Concept Brick Wet Lab Conclusions


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May
MTWTFSS
      [http://2008.igem.org/Newcastle_University_Drylab/1_May_2008 1] [http://2008.igem.org/Newcastle_University_Drylab/2_May_2008 2] [http://2008.igem.org/Newcastle_University_Drylab/3_May_2008 3] [http://2008.igem.org/Newcastle_University_Drylab/4_May_2008 4]
[http://2008.igem.org/Newcastle_University_Drylab/5_May_2008 5] [http://2008.igem.org/Newcastle_University_Drylab/6_May_2008 6] [http://2008.igem.org/Newcastle_University_Drylab/7_May_2008 7] [http://2008.igem.org/Newcastle_University_Drylab/8_May_2008 8] [http://2008.igem.org/Newcastle_University_Drylab/9_May_2008 9] [http://2008.igem.org/Newcastle_University_Drylab/10_May_2008 10] [http://2008.igem.org/Newcastle_University_Drylab/11_May_2008 11]
[http://2008.igem.org/Newcastle_University_Drylab/12_May_2008 12] [http://2008.igem.org/Newcastle_University_Drylab/13_May_2008 13] [http://2008.igem.org/Newcastle_University_Drylab/14_May_2008 14] [http://2008.igem.org/Newcastle_University_Drylab/15_May_2008 15] [http://2008.igem.org/Newcastle_University_Drylab/16_May_2008 16] [http://2008.igem.org/Newcastle_University_Drylab/17_May_2008 17] [http://2008.igem.org/Newcastle_University_Drylab/18_May_2008 18]
[http://2008.igem.org/Newcastle_University_Drylab/19_May_2008 19] [http://2008.igem.org/Newcastle_University_Drylab/20_May_2008 20] [http://2008.igem.org/Newcastle_University_Drylab/21_May_2008 21] [http://2008.igem.org/Newcastle_University_Drylab/22_May_2008 22] [http://2008.igem.org/Newcastle_University_Drylab/23_May_2008 23] [http://2008.igem.org/Newcastle_University_Drylab/24_May_2008 24] [http://2008.igem.org/Newcastle_University_Drylab/25_May_2008 25]
[http://2008.igem.org/Newcastle_University_Drylab/26_May_2008 26] [http://2008.igem.org/Newcastle_University_Drylab/27_May_2008 27] [http://2008.igem.org/Newcastle_University_Drylab/28_May_2008 28] [http://2008.igem.org/Newcastle_University_Drylab/29_May_2008 29] [http://2008.igem.org/Newcastle_University_Drylab/30_May_2008 30] [http://2008.igem.org/Newcastle_University_Drylab/31_May_2008 31]
June
MTWTFSS
            [http://2008.igem.org/Newcastle_University_Drylab/1_June_2008 1]
[http://2008.igem.org/Newcastle_University_Drylab/2_June_2008 2] [http://2008.igem.org/Newcastle_University_Drylab/3_June_2008 3] [http://2008.igem.org/Newcastle_University_Drylab/4_June_2008 4] [http://2008.igem.org/Newcastle_University_Drylab/5_June_2008 5] [http://2008.igem.org/Newcastle_University_Drylab/6_June_2008 6] [http://2008.igem.org/Newcastle_University_Drylab/7_June_2008 7] [http://2008.igem.org/Newcastle_University_Drylab/8_June_2008 8]
[http://2008.igem.org/Newcastle_University_Drylab/9_June_2008 9] [http://2008.igem.org/Newcastle_University_Drylab/10_June_2008 10] [http://2008.igem.org/Newcastle_University_Drylab/11_June_2008 11] [http://2008.igem.org/Newcastle_University_Drylab/12_June_2008 12] [http://2008.igem.org/Newcastle_University_Drylab/13_June_2008 13] [http://2008.igem.org/Newcastle_University_Drylab/14_June_2008 14] [http://2008.igem.org/Newcastle_University_Drylab/15_June_2008 15]
[http://2008.igem.org/Newcastle_University_Drylab/16_June_2008 16] [http://2008.igem.org/Newcastle_University_Drylab/17_June_2008 17] [http://2008.igem.org/Newcastle_University_Drylab/18_June_2008 18] [http://2008.igem.org/Newcastle_University_Drylab/19_June_2008 19] [http://2008.igem.org/Newcastle_University_Drylab/20_June_2008 20] [http://2008.igem.org/Newcastle_University_Drylab/21_June_2008 21] [http://2008.igem.org/Newcastle_University_Drylab/22_June_2008 22]
[http://2008.igem.org/Newcastle_University_Drylab/23_June_2008 23] [http://2008.igem.org/Newcastle_University_Drylab/24_June_2008 24] [http://2008.igem.org/Newcastle_University_Drylab/25_June_2008 25] [http://2008.igem.org/Newcastle_University_Drylab/26_June_2008 26] [http://2008.igem.org/Newcastle_University_Drylab/27_June_2008 27] [http://2008.igem.org/Newcastle_University_Drylab/28_June_2008 28] [http://2008.igem.org/Newcastle_University_Drylab/29_June_2008 29]
[http://2008.igem.org/Newcastle_University_Drylab/30_June_2008 30]
July
MTWTFSS
  [http://2008.igem.org/Newcastle_University_Drylab/1_July_2008 1] [http://2008.igem.org/Newcastle_University_Drylab/2_July_2008 2] [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/3_July_2008&action=edit 3] [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/4_July_2008&action=edit 4] [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/5_July_2008&action=edit 5] [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/6_July_2008&action=edit 6]
[http://2008.igem.org/Newcastle_University_Drylab/7_July_2008 7] [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/8_July_2008&action=edit 8] [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/9_July_2008&action=edit 9] [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/10_July_2008&action=edit 10] [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/11_July_2008&action=edit 11] [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/12_July_2008&action=edit 12] [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/13_July_2008&action=edit 13]
[http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/14_July_2008&action=edit 14] [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/15_July_2008&action=edit 15] [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/16_July_2008&action=edit 16] [http://2008.igem.org/Newcastle_University_Drylab/17_July_2008 17] [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/18_July_2008&action=edit 18] [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/19_July_2008&action=edit 19] [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/20_July_2008&action=edit 20]
[http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/21_July_2008&action=edit 21] [http://2008.igem.org/Newcastle_University_Drylab/22_July_2008 22] [http://2008.igem.org/Newcastle_University_Drylab/23_July_2008 23] [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/24_July_2008&action=edit 24] [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/25_July_2008&action=edit 25] [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/26_July_2008&action=edit 26] [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/27_July_2008&action=edit 27]
[http://2008.igem.org/Newcastle_University_Drylab/28_July_2008 28] [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/29_July_2008&action=edit 29] [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/30_July_2008&action=edit 30] [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/31_July_2008&action=edit 31]
August
MTWTFSS
        [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/1_August_2008&action=edit 1] [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/2_August_2008&action=edit 2] [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/3_August_2008&action=edit 3]
[http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/4_August_2008&action=edit 4] [http://2008.igem.org/Newcastle_University_Drylab/5_August_2008 5] [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/6_August_2008&action=edit 6] [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/7_August_2008&action=edit 7] [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/8_August_2008&action=edit 8] [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/9_August_2008&action=edit 9] [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/10_August_2008&action=edit 10]
[http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/11_August_2008&action=edit 11] [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/12_August_2008&action=edit 12] [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/13_August_2008&action=edit 13] [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/14_August_2008&action=edit 14] [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/15_August_2008&action=edit 15] [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/16_August_2008&action=edit 16] [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/17_August_2008&action=edit 17]
[http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/18_August_2008&action=edit 18] [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/19_August_2008&action=edit 19] [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/20_August_2008&action=edit 20] [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/21_August_2008&action=edit 21] [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/22_August_2008&action=edit 22] [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/23_August_2008&action=edit 23] [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/24_August_2008&action=edit 24]
[http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/25_August_2008&action=edit 25] [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/26_August_2008&action=edit 26] [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/27_August_2008&action=edit 27] [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/28_August_2008&action=edit 28] [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/29_August_2008&action=edit 29] [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/30_August_2008&action=edit 30] [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/31_August_2008&action=edit 31]

8 June 2008

Mark

Megan

Morgan

Nina

Parts for B. cereus

Today I will draw up a detailed list of all the parts in B. cereus for strain ATCC 14579; PlcR regulated protein PRP2; Transcriptional regulator PlcR; Transcriptional activator; PapR: PlcR accociated protein; transcriptional regulator PlcR, putative

Looking at Parts on the operon

Must make sure the genesare on the same strand as the two other proteins (in this case, complement strand). Must make sure the genes are in the same direction. Must make sure the genes are within 1000+\- bp of genes.


List of parts on the operon:

ABC Transporter ATP binding protein, ABC permease protein, two component sensor kinase YocF, two component response regulator YocG, transcriptional activator PlcR, PapR protein, iron-sulphur-binding reductase, acetyl-CoA acetyltransferase, 3-hydroxybutyryl-CoA dehydrogenase, acyl-CoA dehydrogenase, short-chain specific, transcriptional regulator, TetR family, DNA-directed RNA polymerase subunit delta.