Newcastle University Drylab/18 June 2008

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May
MTWTFSS
      [http://2008.igem.org/Newcastle_University_Drylab/1_May_2008 1] [http://2008.igem.org/Newcastle_University_Drylab/2_May_2008 2] [http://2008.igem.org/Newcastle_University_Drylab/3_May_2008 3] [http://2008.igem.org/Newcastle_University_Drylab/4_May_2008 4]
[http://2008.igem.org/Newcastle_University_Drylab/5_May_2008 5] [http://2008.igem.org/Newcastle_University_Drylab/6_May_2008 6] [http://2008.igem.org/Newcastle_University_Drylab/7_May_2008 7] [http://2008.igem.org/Newcastle_University_Drylab/8_May_2008 8] [http://2008.igem.org/Newcastle_University_Drylab/9_May_2008 9] [http://2008.igem.org/Newcastle_University_Drylab/10_May_2008 10] [http://2008.igem.org/Newcastle_University_Drylab/11_May_2008 11]
[http://2008.igem.org/Newcastle_University_Drylab/12_May_2008 12] [http://2008.igem.org/Newcastle_University_Drylab/13_May_2008 13] [http://2008.igem.org/Newcastle_University_Drylab/14_May_2008 14] [http://2008.igem.org/Newcastle_University_Drylab/15_May_2008 15] [http://2008.igem.org/Newcastle_University_Drylab/16_May_2008 16] [http://2008.igem.org/Newcastle_University_Drylab/17_May_2008 17] [http://2008.igem.org/Newcastle_University_Drylab/18_May_2008 18]
[http://2008.igem.org/Newcastle_University_Drylab/19_May_2008 19] [http://2008.igem.org/Newcastle_University_Drylab/20_May_2008 20] [http://2008.igem.org/Newcastle_University_Drylab/21_May_2008 21] [http://2008.igem.org/Newcastle_University_Drylab/22_May_2008 22] [http://2008.igem.org/Newcastle_University_Drylab/23_May_2008 23] [http://2008.igem.org/Newcastle_University_Drylab/24_May_2008 24] [http://2008.igem.org/Newcastle_University_Drylab/25_May_2008 25]
[http://2008.igem.org/Newcastle_University_Drylab/26_May_2008 26] [http://2008.igem.org/Newcastle_University_Drylab/27_May_2008 27] [http://2008.igem.org/Newcastle_University_Drylab/28_May_2008 28] [http://2008.igem.org/Newcastle_University_Drylab/29_May_2008 29] [http://2008.igem.org/Newcastle_University_Drylab/30_May_2008 30] [http://2008.igem.org/Newcastle_University_Drylab/31_May_2008 31]
June
MTWTFSS
            [http://2008.igem.org/Newcastle_University_Drylab/1_June_2008 1]
[http://2008.igem.org/Newcastle_University_Drylab/2_June_2008 2] [http://2008.igem.org/Newcastle_University_Drylab/3_June_2008 3] [http://2008.igem.org/Newcastle_University_Drylab/4_June_2008 4] [http://2008.igem.org/Newcastle_University_Drylab/5_June_2008 5] [http://2008.igem.org/Newcastle_University_Drylab/6_June_2008 6] [http://2008.igem.org/Newcastle_University_Drylab/7_June_2008 7] [http://2008.igem.org/Newcastle_University_Drylab/8_June_2008 8]
[http://2008.igem.org/Newcastle_University_Drylab/9_June_2008 9] [http://2008.igem.org/Newcastle_University_Drylab/10_June_2008 10] [http://2008.igem.org/Newcastle_University_Drylab/11_June_2008 11] [http://2008.igem.org/Newcastle_University_Drylab/12_June_2008 12] [http://2008.igem.org/Newcastle_University_Drylab/13_June_2008 13] [http://2008.igem.org/Newcastle_University_Drylab/14_June_2008 14] [http://2008.igem.org/Newcastle_University_Drylab/15_June_2008 15]
[http://2008.igem.org/Newcastle_University_Drylab/16_June_2008 16] [http://2008.igem.org/Newcastle_University_Drylab/17_June_2008 17] [http://2008.igem.org/Newcastle_University_Drylab/18_June_2008 18] [http://2008.igem.org/Newcastle_University_Drylab/19_June_2008 19] [http://2008.igem.org/Newcastle_University_Drylab/20_June_2008 20] [http://2008.igem.org/Newcastle_University_Drylab/21_June_2008 21] [http://2008.igem.org/Newcastle_University_Drylab/22_June_2008 22]
[http://2008.igem.org/Newcastle_University_Drylab/23_June_2008 23] [http://2008.igem.org/Newcastle_University_Drylab/24_June_2008 24] [http://2008.igem.org/Newcastle_University_Drylab/25_June_2008 25] [http://2008.igem.org/Newcastle_University_Drylab/26_June_2008 26] [http://2008.igem.org/Newcastle_University_Drylab/27_June_2008 27] [http://2008.igem.org/Newcastle_University_Drylab/28_June_2008 28] [http://2008.igem.org/Newcastle_University_Drylab/29_June_2008 29]
[http://2008.igem.org/Newcastle_University_Drylab/30_June_2008 30]
July
MTWTFSS
  [http://2008.igem.org/Newcastle_University_Drylab/1_July_2008 1] [http://2008.igem.org/Newcastle_University_Drylab/2_July_2008 2] [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/3_July_2008&action=edit 3] [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/4_July_2008&action=edit 4] [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/5_July_2008&action=edit 5] [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/6_July_2008&action=edit 6]
[http://2008.igem.org/Newcastle_University_Drylab/7_July_2008 7] [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/8_July_2008&action=edit 8] [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/9_July_2008&action=edit 9] [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/10_July_2008&action=edit 10] [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/11_July_2008&action=edit 11] [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/12_July_2008&action=edit 12] [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/13_July_2008&action=edit 13]
[http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/14_July_2008&action=edit 14] [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/15_July_2008&action=edit 15] [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/16_July_2008&action=edit 16] [http://2008.igem.org/Newcastle_University_Drylab/17_July_2008 17] [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/18_July_2008&action=edit 18] [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/19_July_2008&action=edit 19] [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/20_July_2008&action=edit 20]
[http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/21_July_2008&action=edit 21] [http://2008.igem.org/Newcastle_University_Drylab/22_July_2008 22] [http://2008.igem.org/Newcastle_University_Drylab/23_July_2008 23] [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/24_July_2008&action=edit 24] [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/25_July_2008&action=edit 25] [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/26_July_2008&action=edit 26] [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/27_July_2008&action=edit 27]
[http://2008.igem.org/Newcastle_University_Drylab/28_July_2008 28] [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/29_July_2008&action=edit 29] [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/30_July_2008&action=edit 30] [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/31_July_2008&action=edit 31]
August
MTWTFSS
        [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/1_August_2008&action=edit 1] [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/2_August_2008&action=edit 2] [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/3_August_2008&action=edit 3]
[http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/4_August_2008&action=edit 4] [http://2008.igem.org/Newcastle_University_Drylab/5_August_2008 5] [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/6_August_2008&action=edit 6] [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/7_August_2008&action=edit 7] [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/8_August_2008&action=edit 8] [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/9_August_2008&action=edit 9] [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/10_August_2008&action=edit 10]
[http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/11_August_2008&action=edit 11] [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/12_August_2008&action=edit 12] [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/13_August_2008&action=edit 13] [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/14_August_2008&action=edit 14] [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/15_August_2008&action=edit 15] [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/16_August_2008&action=edit 16] [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/17_August_2008&action=edit 17]
[http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/18_August_2008&action=edit 18] [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/19_August_2008&action=edit 19] [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/20_August_2008&action=edit 20] [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/21_August_2008&action=edit 21] [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/22_August_2008&action=edit 22] [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/23_August_2008&action=edit 23] [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/24_August_2008&action=edit 24]
[http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/25_August_2008&action=edit 25] [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/26_August_2008&action=edit 26] [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/27_August_2008&action=edit 27] [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/28_August_2008&action=edit 28] [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/29_August_2008&action=edit 29] [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/30_August_2008&action=edit 30] [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/31_August_2008&action=edit 31]

18 June 2008

Mark

Again worked on system architecture, also had a meeting with Jen - got the different system modules to send stuff to each other.


Megan

Morgan

Decided today I WILL MAKE CELLML API DOM COMPILE. RR. Because I don't seem to be getting a response from the CellML mailing list about the JAXB problem of Friday, JSim is crap, and I really need something to provide CellML input and output.

I've been avoiding the CellML API DOM because it's only compilable on one machine. That is, I've compiled it on Linux and now it'll only run on Linux. Sigh.

I finally got it to compile. When I ran configure as instructed in the README, it crapped out because it said it needed the GSL CBLAS library. I went looking for that. It's amazing how scattered the instructions are to make it work. Finally downloaded the most recent from ftp://ftp.gnu.org/gnu/gsl/ , version 1.11, and unzipped it to my desktop. Then I went to the GSL manual page on compiling and linking and found buried in there that I had to run this command:

$ gcc -Wall -I/usr/local/include -c example.c

Except instead of example.c, I decided to give it a whirl and run:

$ gcc -Wall -I/usr/local/include -c *.c

It spewed a bunch of error messages, so I was cringing, but I decided to run configure again and hey, it worked! Hurrah.

Had to run sudo on make install, but that worked too. Yay.

Why is compiling other people's software so hard?

I pulled out the Java book with CORBA examples, because the CellML DOM API proclaims that it has IDL for interfacing with other languages. From the CellML_DOM_API_1_4/interfaces folder, I ran:

$ idlj CellML_APISPEC.idl

It produced a whole line of errors relating to unknown "pragma"s. I hope I can ignore them anyway, because I did.

Now I have a folder full of Java interfaces...


Nina

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