NTU@iGEM Project Introduction Methodology Team Introduction Team background Notebook Dry Lab Introduction ODEs used Modeling Constructs Parameters used Deterministic Modeling Sensitivity Analysis Stochastic Modeling Wetlab Introduction Materials and Equipment Protocols Verification of Detection & Lysis System Our New Parts Characterization Introduction Standard Promoters Characterization of pLacI-GFP pLacI-GFP images and clips Characterization of pLsrA-YFP New characterization Proposal Parameter Estimation & Correlations Acknowledgements

Introduction

ENGINEERING COLICIN E7 PRODUCTION SYSTEM TO KILL ENTEROHEMORRHAGIC ESCHERICHIA COLI O157:H7 (EHEC) VIA THE DETECTION OF EHEC SYMPTOMS

The focus of the NTU @ iGEM Team's project is the use of bacteriocins (i.e. colicin E7) for the killing of the Escherichia Coli O157:H7 enterohemorrhagic strain (EHEC), which causes symptoms such as bloody diarrhea and kidney failure. This is a prevalent medical problem that has a reach of a wide population. The team intends to achieve its objective by engineering a biological system that:

i) produces Colicin E7,
ii) detects the symptoms (e.g. blood) and presence of pathogenic E-Coli, and
iii) releases E7 through lysis.

The system will be developed using the following proposed protocol: Colicin E7 production is achieved by the insertion of the colicin E7 gene and colicin immunity gene downstream of and under regulation of the lacI gene, found in wild type E. Coli K12 strain. The production of the lysis protein functions under the control of an AND gate, constructed by two plasmids, and whose inputs are presence of Fe²⁺ ions (attributed to presence of blood) and AI-2 (attributed to presence of O157:H7).

The team's aim is to control the level of colicin production in the engineered bacteria. The engineered bacteria should also be able to be accurate in its detection. LuxS knock-out was carried out to eliminate AI-2 production of K12, obtaining mutant W3110 strain, thus ensuring that AI-2 detected is purely from O157:H7. Upon detection of Fe²⁺ ions, T7ptag expression is initiated producing T7 RNA Polymerase. Upon detection of phosphorylated AI-2, expression of the supD gene is initiated by activation of promoter lsrA, producing amber suppressor tRNA. In combination, the two upstream inputs activate the expression of the lysis protein gene, under the influence of R6K origin, resulting in amplified response of the AND gate.

The team also intends to characterize the various parts and devices used in the project, in terms of sensitivity to temperature and input concentrations by fluorescence assay and Western blotting. The team will conduct the modeling of the systems.
The team will employ the methodology derived from basic engineering concepts: Abstraction, decoupling and standardization.

For any comments or enquiries, feel free to contact us at ntu.igem@gmail.com