Team:ETH Zurich/Test2

From 2008.igem.org

(Difference between revisions)
Line 9: Line 9:
! Average number of genes per fragments
! Average number of genes per fragments
! Variance number of genes per fragments
! Variance number of genes per fragments
-
|-
+
! Percentage of fragments with one or more essential genes
-
|FseI RigI
+
-
|GGCCGGCC
+
-
|4
+
-
|1161583
+
-
|1.388453e+012
+
-
|935
+
-
|1225974
+
|-
|-
|AbsI  
|AbsI  
Line 25: Line 18:
|4.285000e+002
|4.285000e+002
|1.724534e+005
|1.724534e+005
 +
|5.515899e-002
|-
|-
-
|AspA2I AvrII BlnI XmaJI
+
|Acc65I  
-
|CCTAGG
+
-
|16
+
-
|2.903958e+005
+
-
|1.270844e+011
+
-
|2.673750e+002
+
-
|1.135188e+005
+
-
|-
+
-
|CciNI NotI
+
-
|GCGGCCGC
+
-
|23
+
-
|2.020144e+005
+
-
|3.296516e+010
+
-
|1.746522e+002
+
-
|2.725442e+004
+
-
|-
+
-
|MreI Sse232I
+
-
|CGCCGGCG
+
-
|30
+
-
|1.548777e+005
+
-
|1.988095e+010
+
-
|1.289000e+002
+
-
|1.419651e+004
+
-
|-
+
-
|SfiI
+
-
|GGCCNNNNNGGCC
+
-
|31
+
-
|1.498817e+005
+
-
|1.719847e+010
+
-
|1.281290e+002
+
-
|1.367005e+004
+
-
|-
+
-
|SanDI
+
-
|GGGWCCC
+
-
|33
+
-
|1.407979e+005
+
-
|1.633491e+010
+
-
|1.313030e+002
+
-
|1.409122e+004
+
-
|-
+
-
|SgrDI
+
-
|CGTCGACG
+
-
|36
+
-
|1.290648e+005
+
-
|1.912706e+010
+
-
|1.158889e+002
+
-
|1.450587e+004
+
-
|-
+
-
|XbaI
+
-
|TCTAGA
+
-
|40
+
-
|1.161583e+005
+
-
|1.261032e+010
+
-
|1.070750e+002
+
-
|1.135899e+004
+
-
|-
+
-
|SrfI
+
-
|GCCCGGGC
+
-
|43
+
-
|1.080542e+005
+
-
|6.721085e+009
+
-
|9.620930e+001
+
-
|4.987455e+003
+
-
|-
+
-
|Sse8647I
+
-
|aggwcct
+
-
|66
+
-
|7.039897e+004
+
-
|5.111447e+009
+
-
|6.515152e+001
+
-
|4.528100e+003
+
-
|-
+
-
|ApaI Bsp120I PspOMI
+
-
|GGGCCC
+
-
|67
+
-
|6.934824e+004
+
-
|4.844790e+009
+
-
|6.386567e+001
+
-
|4.451603e+003
+
-
|-
+
-
|SbfI SdaI Sse8387I
+
-
|CCTGCAGG
+
-
|68
+
-
|6.832841e+004
+
-
|4.351616e+009
+
-
|6.173529e+001
+
-
|3.424944e+003
+
-
|-
+
-
|AhlI BcuI SpeI
+
-
|ACTAGT
+
-
|86
+
-
|5.402712e+004
+
-
|4.732091e+009
+
-
|5.041860e+001
+
-
|3.912482e+003
+
-
|-
+
-
|MssI PmeI
+
-
|GTTTAAAC
+
-
|87
+
-
|5.340611e+004
+
-
|2.475081e+009
+
-
|4.841379e+001
+
-
|2.155548e+003
+
-
|-
+
-
|BbeI DinI EgeI EheI KasI Mly113I NarI SfoI
+
-
|GGCGCC
+
-
|99
+
-
|4.693265e+004
+
-
|2.444902e+009
+
-
|4.311111e+001
+
-
|2.108875e+003
+
-
|-
+
-
|PspXI
+
-
|VCTCGAGB
+
-
|110
+
-
|4.223938e+004
+
-
|2.634945e+009
+
-
|3.784545e+001
+
-
|2.109563e+003
+
-
|-
+
-
|SmiI SwaI
+
-
|ATTTAAAT
+
-
|117
+
-
|3.971224e+004
+
-
|1.557045e+009
+
-
|3.688889e+001
+
-
|1.288738e+003
+
-
|-
+
-
|BsaI Bso31I BspTNI Eco31I
+
-
|GGTCTC
+
-
|119
+
-
|3.904481e+004
+
-
|2.461282e+009
+
-
|36
+
-
|2.099407e+003
+
-
|-
+
-
|BbvCI
+
-
|CCTCAGC
+
-
|129
+
-
|3.601808e+004
+
-
|2.189274e+009
+
-
|3.353488e+001
+
-
|1.831407e+003
+
-
|-
+
-
|UbaF12I
+
-
|ctacnnngtc
+
-
|140
+
-
|3.318809e+004
+
-
|8.916053e+008
+
-
|3.092857e+001
+
-
|8.460956e+002
+
-
|-
+
-
|AcvI BbrPI Eco72I PmaCI PmlI PspCI
+
-
|CACGTG
+
-
|143
+
-
|3.249183e+004
+
-
|1.665365e+009
+
-
|3.002098e+001
+
-
|1.466401e+003
+
-
|-
+
-
|PacI
+
-
|TTAATTAA
+
-
|143
+
-
|3.249183e+004
+
-
|1.107201e+009
+
-
|3.002098e+001
+
-
|8.897390e+002
+
-
|-
+
-
|Ecl136II EcoICRI Psp124BI SacI SstI
+
-
|GAGCTC
+
-
|151
+
-
|3.077041e+004
+
-
|9.945293e+008
+
-
|2.866887e+001
+
-
|8.549030e+002
+
-
|-
+
-
|AsuNHI BmtI BspOI NheI
+
-
|GCTAGC
+
-
|156
+
-
|2.978418e+004
+
-
|7.909314e+008
+
-
|2.779487e+001
+
-
|6.727835e+002
+
-
|-
+
-
|MauBI
+
-
|cgcgcgcg
+
-
|160
+
-
|2.903958e+004
+
-
|9.985228e+008
+
-
|2.697500e+001
+
-
|9.167038e+002
+
-
|-
+
-
|AscI PalAI SgsI
+
-
|GGCGCGCC
+
-
|165
+
-
|2.815959e+004
+
-
|8.653289e+008
+
-
|2.601818e+001
+
-
|7.766155e+002
+
-
|-
+
-
|PaeR7I SciI Sfr274I SlaI StrI TliI XhoI
+
-
|CTCGAG
+
-
|178
+
-
|2.610299e+004
+
-
|5.691406e+008
+
-
|2.412360e+001
+
-
|4.729564e+002
+
-
|-
+
-
|AsiSI RgaI SgfI
+
-
|GCGATCGC
+
-
|222
+
-
|2.092942e+004
+
-
|3.532848e+008
+
-
|1.950000e+001
+
-
|3.320973e+002
+
-
|-
+
-
|AxyI Bse21I Bsu36I Eco81I SauI
+
-
|CCTNAGG
+
-
|257
+
-
|1.807911e+004
+
-
|3.219393e+008
+
-
|1.687160e+001
+
-
|2.831905e+002
+
-
|-
+
-
|PpuMI Psp5II PspPPI
+
-
|RGGWCCY
+
-
|257
+
-
|1.807911e+004
+
-
|4.225263e+008
+
-
|1.687160e+001
+
-
|3.857842e+002
+
-
|-
+
-
|BseX3I BstZI EagI EclXI Eco52I XmaIII
+
-
|CGGCCG
+
-
|282
+
-
|1.647635e+004
+
-
|3.461436e+008
+
-
|1.537234e+001
+
-
|3.156296e+002
+
-
|-
+
-
|MroNI NaeI NgoMIV PdiI
+
-
|GCCGGC
+
-
|302
+
-
|1.538521e+004
+
-
|2.867138e+008
+
-
|1.435099e+001
+
-
|2.609395e+002
+
-
|-
+
-
|UbaF9I
+
-
|tacnnnnnrtgt
+
-
|302
+
-
|1.538521e+004
+
-
|2.427370e+008
+
-
|1.431126e+001
+
-
|2.287533e+002
+
-
|-
+
-
|BspQI LguI PciSI SapI
+
-
|GCTCTTC
+
-
|334
+
-
|1.391117e+004
+
-
|2.753008e+008
+
-
|1.285928e+001
+
-
|2.426378e+002
+
-
|-
+
-
|PasI
+
-
|CCCWGGG
+
-
|336
+
-
|1.382837e+004
+
-
|1.760959e+008
+
-
|1.287202e+001
+
-
|1.718552e+002
+
-
|-
+
-
|PpiI
+
-
|GAACNNNNNCTC
+
-
|342
+
-
|1.358577e+004
+
-
|5.363972e+008
+
-
|1.226608e+001
+
-
|4.301665e+002
+
-
|-
+
-
|BauI BsiI BssSI Bst2BI
+
-
|CACGAG
+
-
|358
+
-
|1.297858e+004
+
-
|2.254207e+008
+
-
|1.206145e+001
+
-
|1.996097e+002
+
-
|-
+
-
|UbaF13I
+
-
|gagnnnnnnctgg
+
-
|362
+
-
|1.283517e+004
+
-
|1.914252e+008
+
-
|1.196961e+001
+
-
|1.724340e+002
+
-
|-
+
-
|BseRI
+
-
|GAGGAG
+
-
|388
+
-
|1.197508e+004
+
-
|1.778986e+008
+
-
|1.114691e+001
+
-
|1.500585e+002
+
-
|-
+
-
|CpoI CspI RsrII Rsr2I
+
-
|CGGWCCG
+
-
|389
+
-
|1.194430e+004
+
-
|1.654756e+008
+
-
|1.111825e+001
+
-
|1.481045e+002
+
-
|-
+
-
|BssNAI Bst1107I BstZ17I SnaI
+
-
|GTATAC
+
-
|391
+
-
|1.188320e+004
+
-
|1.314576e+008
+
-
|1.107417e+001
+
-
|1.120073e+002
+
-
|-
+
-
|FspAI
+
-
|RTGCGCAY
+
-
|397
+
-
|1.170361e+004
+
-
|1.372206e+008
+
-
|1.091184e+001
+
-
|1.236968e+002
+
-
|-
+
-
|AssI BmcAI ScaI ZrmI
+
-
|AGTACT
+
-
|400
+
-
|1.161583e+004
+
-
|1.424631e+008
+
-
|1.071000e+001
+
-
|1.225924e+002
+
-
|-
+
-
|Cfr9I SmaI TspMI XmaI XmaCI
+
-
|CCCGGG
+
-
|429
+
-
|1.083061e+004
+
-
|1.237159e+008
+
-
|1.008159e+001
+
-
|1.070985e+002
+
-
|-
+
-
|PsrI
+
-
|GAACNNNNNNTAC
+
-
|430
+
-
|1.080542e+004
+
-
|3.827740e+008
+
-
|1.007674e+001
+
-
|3.428822e+002
+
-
|-
+
-
|AloI
+
-
|GAACNNNNNNTCC
+
-
|458
+
-
|1.014483e+004
+
-
|3.571443e+008
+
-
|9.447598e+000
+
-
|3.339721e+002
+
-
|-
+
-
|AjuI
+
-
|GAANNNNNNNTTGG
+
-
|466
+
-
|9.970670e+003
+
-
|2.914028e+008
+
-
|9.261803e+000
+
-
|2.620517e+002
+
-
|-
+
-
|AlwFI
+
-
|gaaaynnnnnrtg
+
-
|467
+
-
|9.949319e+003
+
-
|1.144785e+008
+
-
|9.259101e+000
+
-
|9.897350e+001
+
-
|-
+
-
|BspLU11I PciI PscI
+
-
|ACATGT
+
-
|475
+
-
|9.781752e+003
+
-
|1.012818e+008
+
-
|9.120000e+000
+
-
|8.970498e+001
+
-
|-
+
-
|TssI
+
-
|gagnnnctc
+
-
|485
+
-
|9.580066e+003
+
-
|8.958870e+007
+
-
|8.927835e+000
+
-
|8.277371e+001
+
-
|-
+
-
|Bce83I BpuEI
+
-
|cttgag
+
-
|487
+
-
|9.540723e+003
+
-
|9.609306e+007
+
-
|8.878850e+000
+
-
|8.443591e+001
+
-
|-
+
-
|BamHI
+
-
|GGATCC
+
-
|494
+
-
|9.405530e+003
+
-
|8.826372e+007
+
-
|8.761134e+000
+
-
|7.981301e+001
+
-
|-
+
-
|Pfl1108I
+
-
|tcgtag
+
-
|497
+
-
|9.348757e+003
+
-
|1.009106e+008
+
-
|8.696177e+000
+
-
|9.323613e+001
+
-
|-
+
-
|AhdI AspEI BmeRI DriI Eam1105I EclHKI
+
-
|GACNNNNNGTC
+
-
|502
+
-
|9.255641e+003
+
-
|9.869322e+007
+
-
|8.625498e+000
+
-
|9.207504e+001
+
-
|-
+
-
|DraII EcoO109I PssI
+
-
|RGGNCCY
+
-
|507
+
-
|9.164363e+003
+
-
|1.077677e+008
+
-
|8.552268e+000
+
-
|9.696712e+001
+
-
|-
+
-
|Acc65I Asp718I KpnI
+
|GGTACC
|GGTACC
|517
|517
Line 465: Line 27:
|8.382979e+000
|8.382979e+000
|9.524064e+001
|9.524064e+001
-
|-
+
|5.515899e-002
-
|BsmBI Esp3I
+
-
|CGTCTC
+
-
|530
+
-
|8.766664e+003
+
-
|8.445298e+007
+
-
|8.173585e+000
+
-
|7.845752e+001
+
-
|-
+
-
|BanII Eco24I EcoT38I FriOI HgiJII
+
-
|GRGCYC
+
-
|531
+
-
|8.750154e+003
+
-
|1.102563e+008
+
-
|8.152542e+000
+
-
|1.005937e+002
+
-
|-
+
-
|SalI
+
-
|GTCGAC
+
-
|544
+
-
|8.541051e+003
+
-
|7.756234e+007
+
-
|7.961397e+000
+
-
|7.273331e+001
+
-
|-
+
-
|BstSNI Eco105I SnaBI
+
-
|TACGTA
+
-
|545
+
-
|8.525380e+003
+
-
|7.290952e+007
+
-
|7.955963e+000
+
-
|6.732526e+001
+
-
|-
+
-
|SgrAI
+
-
|CRCCGGYG
+
-
|547
+
-
|8.494208e+003
+
-
|8.070398e+007
+
-
|7.915905e+000
+
-
|7.989401e+001
+
-
|-
+
-
|Bpu10I
+
-
|CCTNAGC
+
-
|553
+
-
|8.402047e+003
+
-
|7.139938e+007
+
-
|7.822785e+000
+
-
|6.174028e+001
+
-
|-
+
-
|BstENI EcoNI XagI
+
-
|CCTNNNNNAGG
+
-
|553
+
-
|8.402047e+003
+
-
|7.377756e+007
+
-
|7.822785e+000
+
-
|6.588883e+001
+
-
|-
+
-
|AflII BfrI BspTI Bst98I MspCI Vha464I
+
-
|CTTAAG
+
-
|557
+
-
|8.341709e+003
+
-
|7.642692e+007
+
-
|7.779174e+000
+
-
|7.242057e+001
+
-
|-
+
-
|HindIII
+
-
|AAGCTT
+
-
|561
+
-
|8.282232e+003
+
-
|9.146291e+007
+
-
|7.709447e+000
+
-
|8.280650e+001
+
|-
|-
|AarI  
|AarI  
Line 545: Line 36:
|7.609155e+000
|7.609155e+000
|7.131082e+001
|7.131082e+001
 +
|5.515899e-002
|-
|-
-
|Bsp1407I BsrGI BstAUI SspBI
+
|AatI  
-
|TGTACA
+
-
|569
+
-
|8.165786e+003
+
-
|6.052577e+007
+
-
|7.597540e+000
+
-
|5.689232e+001
+
-
|-
+
-
|Alw44I ApaLI VneI
+
-
|GTGCAC
+
-
|575
+
-
|8.080577e+003
+
-
|6.496629e+007
+
-
|7.539130e+000
+
-
|6.295970e+001
+
-
|-
+
-
|CstMI
+
-
|aaggag
+
-
|577
+
-
|8.052568e+003
+
-
|5.843356e+007
+
-
|7.511265e+000
+
-
|5.351767e+001
+
-
|-
+
-
|AspI PflFI PsyI Tth111I
+
-
|GACNNNGTC
+
-
|581
+
-
|7.997129e+003
+
-
|6.373313e+007
+
-
|7.462995e+000
+
-
|6.003527e+001
+
-
|-
+
-
|BbuI PaeI SphI
+
-
|GCATGC
+
-
|591
+
-
|7.861814e+003
+
-
|7.342241e+007
+
-
|7.335025e+000
+
-
|6.541977e+001
+
-
|-
+
-
|BsiWI Pfl23II PspLI SplI
+
-
|CGTACG
+
-
|592
+
-
|7.848534e+003
+
-
|6.761762e+007
+
-
|7.312500e+000
+
-
|6.442164e+001
+
-
|-
+
-
|AatI Eco147I PceI SseBI StuI
+
|AGGCCT
|AGGCCT
|604
|604
Line 601: Line 45:
|7.167219e+000
|7.167219e+000
|7.203998e+001
|7.203998e+001
 +
|5.515899e-002
|-
|-
-
|CspCI
+
|AatII  
-
|CAANNNNNGTGG
+
-
|606
+
-
|7.667215e+003
+
-
|1.812084e+008
+
-
|7.155116e+000
+
-
|1.552057e+002
+
-
|-
+
-
|BmgI
+
-
|gkgccc
+
-
|617
+
-
|7.530522e+003
+
-
|6.062109e+007
+
-
|7.006483e+000
+
-
|5.899022e+001
+
-
|-
+
-
|Bsp19I NcoI
+
-
|CCATGG
+
-
|619
+
-
|7.506191e+003
+
-
|5.573513e+007
+
-
|6.972536e+000
+
-
|5.226947e+001
+
-
|-
+
-
|BalI MlsI MluNI MscI Msp20I
+
-
|TGGCCA
+
-
|636
+
-
|7.305553e+003
+
-
|5.185561e+007
+
-
|6.812893e+000
+
-
|4.953816e+001
+
-
|-
+
-
|EcoRI
+
-
|GAATTC
+
-
|649
+
-
|7.159217e+003
+
-
|5.447496e+007
+
-
|6.671803e+000
+
-
|5.029798e+001
+
-
|-
+
-
|Cfr42I KspI SacII Sfr303I SgrBI SstII
+
-
|CCGCGG
+
-
|664
+
-
|6.997488e+003
+
-
|4.434429e+007
+
-
|6.524096e+000
+
-
|4.313366e+001
+
-
|-
+
-
|BoxI BstPAI PshAI
+
-
|GACNNNNGTC
+
-
|674
+
-
|6.893668e+003
+
-
|4.704915e+007
+
-
|6.408012e+000
+
-
|4.697592e+001
+
-
|-
+
-
|FauNDI NdeI
+
-
|CATATG
+
-
|682
+
-
|6.812804e+003
+
-
|4.408884e+007
+
-
|6.338710e+000
+
-
|4.121991e+001
+
-
|-
+
-
|BglII
+
-
|AGATCT
+
-
|704
+
-
|6.599903e+003
+
-
|4.166171e+007
+
-
|6.147727e+000
+
-
|4.007203e+001
+
-
|-
+
-
|AatII ZraI
+
|GACGTC
|GACGTC
|713
|713
Line 681: Line 54:
|6.077139e+000
|6.077139e+000
|4.286623e+001
|4.286623e+001
 +
|5.515899e-002
|-
|-
-
|AasI DrdI DseDI
+
|AasI  
|GACNNNNNNGTC
|GACNNNNNNGTC
|732
|732
Line 689: Line 63:
|5.922131e+000
|5.922131e+000
|4.714988e+001
|4.714988e+001
 +
|5.515899e-002
|-
|-
-
|RleAI
+
|AccIII  
-
|cccaca
+
-
|737
+
-
|6.304385e+003
+
-
|4.379164e+007
+
-
|5.879240e+000
+
-
|4.430741e+001
+
-
|-
+
-
|AjiI BmgBI BtrI
+
-
|CACGTC
+
-
|750
+
-
|6.195109e+003
+
-
|3.923853e+007
+
-
|5.780000e+000
+
-
|3.753899e+001
+
-
|-
+
-
|BciVI BfuI
+
-
|GTATCC
+
-
|750
+
-
|6.195109e+003
+
-
|3.753824e+007
+
-
|5.780000e+000
+
-
|3.443084e+001
+
-
|-
+
-
|BplI
+
-
|GAGNNNNNCTC
+
-
|766
+
-
|6.065708e+003
+
-
|1.331965e+008
+
-
|5.652742e+000
+
-
|1.218034e+002
+
-
|-
+
-
|AfeI Aor51HI Eco47III
+
-
|AGCGCT
+
-
|778
+
-
|5.972149e+003
+
-
|4.358465e+007
+
-
|5.568123e+000
+
-
|4.418390e+001
+
-
|-
+
-
|BaeI
+
-
|ACNNNNGTAYC
+
-
|778
+
-
|5.972149e+003
+
-
|1.137306e+008
+
-
|5.548843e+000
+
-
|1.008863e+002
+
-
|-
+
-
|AsuII Bpu14I Bsp119I BspT104I BstBI Csp45I NspV SfuI
+
-
|TTCGAA
+
-
|799
+
-
|5.815184e+003
+
-
|4.529479e+007
+
-
|5.425532e+000
+
-
|4.161068e+001
+
-
|-
+
-
|MabI SexAI
+
-
|ACCWGGT
+
-
|807
+
-
|5.757537e+003
+
-
|3.149664e+007
+
-
|5.371747e+000
+
-
|2.968545e+001
+
-
|-
+
-
|AdeI DraIII
+
-
|CACNNNGTG
+
-
|838
+
-
|5.544549e+003
+
-
|3.006020e+007
+
-
|5.161098e+000
+
-
|2.996326e+001
+
-
|-
+
-
|Bbr7I BbsI BbvII BpiI BpuAI BstV2I
+
-
|gaagac
+
-
|840
+
-
|5.531348e+003
+
-
|3.739786e+007
+
-
|5.160714e+000
+
-
|3.559631e+001
+
-
|-
+
-
|AvaIII EcoT22I Mph1103I NsiI Ppu10I Zsp2I
+
-
|atgcat
+
-
|844
+
-
|5.505133e+003
+
-
|3.383794e+007
+
-
|5.136256e+000
+
-
|3.142744e+001
+
-
|-
+
-
|BlpI Bpu1102I Bsp1720I CelII EspI
+
-
|GCTNAGC
+
-
|864
+
-
|5.377699e+003
+
-
|3.319901e+007
+
-
|5.015046e+000
+
-
|3.153280e+001
+
-
|-
+
-
|PsiI
+
-
|TTATAA
+
-
|871
+
-
|5.334480e+003
+
-
|3.987655e+007
+
-
|4.978186e+000
+
-
|3.585355e+001
+
-
|-
+
-
|BfaI FspBI MaeI XspI
+
-
|CTAG
+
-
|886
+
-
|5.244167e+003
+
-
|4.230087e+007
+
-
|4.893905e+000
+
-
|3.747800e+001
+
-
|-
+
-
|AleI OliI
+
-
|CACNNNNGTG
+
-
|892
+
-
|5.208892e+003
+
-
|2.691152e+007
+
-
|4.859865e+000
+
-
|2.684117e+001
+
-
|-
+
-
|AccIII Aor13HI BlfI BseAI Bsp13I BspEI BspMII Kpn2I MroI
+
|TCCGGA
|TCCGGA
|918
|918
Line 817: Line 72:
|4.712418e+000
|4.712418e+000
|2.924981e+001
|2.924981e+001
 +
|5.515899e-002
|-
|-
-
|BsaXI
+
|AccBSI  
-
|ACNNNNNCTCC
+
-
|926
+
-
|5.017637e+003
+
-
|8.028972e+007
+
-
|4.678186e+000
+
-
|6.949849e+001
+
-
|-
+
-
|BspMAI PstI
+
-
|CTGCAG
+
-
|956
+
-
|4.860180e+003
+
-
|3.293598e+007
+
-
|4.529289e+000
+
-
|2.898448e+001
+
-
|-
+
-
|AccBSI BsrBI MbiI
+
|CCGCTC
|CCGCTC
|981
|981
Line 841: Line 81:
|4.417941e+000
|4.417941e+000
|2.645168e+001
|2.645168e+001
-
|-
+
|5.515899e-002
-
|MfeI MunI
+
-
|CAATTG
+
-
|993
+
-
|4.679086e+003
+
-
|2.233435e+007
+
-
|4.366566e+000
+
-
|2.162759e+001
+
-
|-
+
-
|BfiI BmrI BmuI
+
-
|ACTGGG
+
-
|1010
+
-
|4.600329e+003
+
-
|2.712749e+007
+
-
|4.286139e+000
+
-
|2.642845e+001
+
-
|-
+
-
|DrdII
+
-
|gaacca
+
-
|1036
+
-
|4.484876e+003
+
-
|2.426710e+007
+
-
|4.183398e+000
+
-
|2.387744e+001
+
-
|-
+
-
|PfoI
+
-
|TCCNGGA
+
-
|1036
+
-
|4.484876e+003
+
-
|1.797340e+007
+
-
|4.169884e+000
+
-
|1.812957e+001
+
-
|-
+
-
|BspGI
+
-
|ctggac
+
-
|1045
+
-
|4.446251e+003
+
-
|2.228959e+007
+
-
|4.142584e+000
+
-
|2.129095e+001
+
-
|-
+
-
|NmeAIII
+
-
|GCCGAG
+
-
|1047
+
-
|4.437757e+003
+
-
|2.560076e+007
+
-
|4.140401e+000
+
-
|2.644968e+001
+
-
|-
+
-
|BssT1I Eco130I EcoT14I ErhI StyI
+
-
|CCWWGG
+
-
|1083
+
-
|4.290242e+003
+
-
|2.254792e+007
+
-
|3.992613e+000
+
-
|2.147869e+001
+
-
|-
+
-
|UbaPI
+
-
|cgaacg
+
-
|1117
+
-
|4.159653e+003
+
-
|1.900650e+007
+
-
|3.880931e+000
+
-
|1.932004e+001
+
-
|-
+
-
|CjuII
+
-
|caynnnnnctc
+
-
|1118
+
-
|4.155932e+003
+
-
|1.842937e+007
+
-
|3.869410e+000
+
-
|1.646458e+001
+
-
|-
+
-
|MmeI
+
-
|TCCRAC
+
-
|1119
+
-
|4.152218e+003
+
-
|1.821435e+007
+
-
|3.874888e+000
+
-
|1.885016e+001
+
-
|-
+
-
|BspHI PagI RcaI
+
-
|TCATGA
+
-
|1159
+
-
|4.008915e+003
+
-
|1.877300e+007
+
-
|3.738568e+000
+
-
|1.828652e+001
+
-
|-
+
-
|BsbI
+
-
|caacac
+
-
|1179
+
-
|3.940909e+003
+
-
|1.510531e+007
+
-
|3.667515e+000
+
-
|1.472977e+001
+
-
|-
+
-
|Ama87I AvaI BmeT110I BsiHKCI BsoBI Eco88I Nli3877I
+
-
|CYCGRG
+
-
|1251
+
-
|3.714094e+003
+
-
|1.459236e+007
+
-
|3.463629e+000
+
-
|1.474328e+001
+
-
|-
+
-
|BsaMI BsmI Mva1269I PctI
+
-
|GAATGC
+
-
|1317
+
-
|3.527967e+003
+
-
|1.298815e+007
+
-
|3.287775e+000
+
-
|1.231302e+001
+
-
|-
+
-
|MluI
+
-
|ACGCGT
+
-
|1322
+
-
|3.514623e+003
+
-
|1.261258e+007
+
-
|3.275340e+000
+
-
|1.379090e+001
+
-
|-
+
-
|BpvUI MvrI Ple19I PvuI
+
-
|CGATCG
+
-
|1344
+
-
|3.457092e+003
+
-
|1.374162e+007
+
-
|3.223214e+000
+
-
|1.520107e+001
+
-
|-
+
-
|GdiII
+
-
|cggccr
+
-
|1369
+
-
|3.393961e+003
+
-
|1.498846e+007
+
-
|3.166545e+000
+
-
|1.520616e+001
+
-
|-
+
-
|BslFI BsmFI FaqI FinI
+
-
|GGGAC
+
-
|1377
+
-
|3.374243e+003
+
-
|1.520394e+007
+
-
|3.148148e+000
+
-
|1.517571e+001
+
-
|-
+
-
|BstEII BstPI Eco91I EcoO65I PspEI
+
-
|GGTNACC
+
-
|1382
+
-
|3.362035e+003
+
-
|1.183829e+007
+
-
|3.136035e+000
+
-
|1.199741e+001
+
-
|-
+
-
|BpmI GsuI
+
-
|CTGGAG
+
-
|1389
+
-
|3.345091e+003
+
-
|1.411505e+007
+
-
|3.119510e+000
+
-
|1.367447e+001
+
-
|-
+
-
|TstI
+
-
|CACNNNNNNTCC
+
-
|1398
+
-
|3.323557e+003
+
-
|3.551349e+007
+
-
|3.097282e+000
+
-
|3.259039e+001
+
-
|-
+
-
|Bsp68I BtuMI NruI
+
-
|TCGCGA
+
-
|1410
+
-
|3.295271e+003
+
-
|1.232041e+007
+
-
|3.070922e+000
+
-
|1.380334e+001
+
-
|-
+
-
|BanIII Bsa29I BseCI BshVI BspDI BspXI Bsu15I BsuTUI ClaI
+
-
|ATCGAT
+
-
|1416
+
-
|3.281308e+003
+
-
|1.097055e+007
+
-
|3.060028e+000
+
-
|1.111512e+001
+
-
|-
+
-
|Alw26I BsmAI BstMAI
+
-
|GTCTC
+
-
|1427
+
-
|3.256014e+003
+
-
|1.186172e+007
+
-
|3.035739e+000
+
-
|1.158848e+001
+
-
|-
+
-
|AcuI Eco57I
+
-
|CTGAAG
+
-
|1437
+
-
|3.233356e+003
+
-
|1.314021e+007
+
-
|3.016006e+000
+
-
|1.206869e+001
+
-
|-
+
-
|BtsI
+
-
|GCAGTG
+
-
|1445
+
-
|3.215455e+003
+
-
|1.093510e+007
+
-
|2.995848e+000
+
-
|1.077561e+001
+
-
|-
+
-
|HgiEII
+
-
|accnnnnnnggt
+
-
|1473
+
-
|3.154333e+003
+
-
|1.004758e+007
+
-
|2.942974e+000
+
-
|1.032555e+001
+
-
|-
+
-
|Bst6I Eam1104I EarI Ksp632I
+
-
|CTCTTC
+
-
|1474
+
-
|3.152193e+003
+
-
|1.409219e+007
+
-
|2.934193e+000
+
-
|1.510700e+001
+
-
|-
+
-
|FalI
+
-
|AAGNNNNNCTT
+
-
|1474
+
-
|3.152193e+003
+
-
|3.050588e+007
+
-
|2.937585e+000
+
-
|2.757655e+001
+
-
|-
+
-
|BsgI
+
-
|GTGCAG
+
-
|1501
+
-
|3.095491e+003
+
-
|1.097475e+007
+
-
|2.887408e+000
+
-
|1.120398e+001
+
|-
|-
|AceIII  
|AceIII  
Line 1,089: Line 90:
|2.813108e+000
|2.813108e+000
|1.164687e+001
|1.164687e+001
 +
|5.515899e-002
|-
|-
-
|Bsp24I
+
|AccI  
-
|gacnnnnnntgg
+
-
|1574
+
-
|2.951926e+003
+
-
|2.502296e+007
+
-
|2.750318e+000
+
-
|2.324531e+001
+
-
|-
+
-
|HpaI KspAI
+
-
|GTTAAC
+
-
|1597
+
-
|2.909413e+003
+
-
|8.608630e+006
+
-
|2.715091e+000
+
-
|9.034691e+000
+
-
|-
+
-
|BclI FbaI Ksp22I
+
-
|TGATCA
+
-
|1608
+
-
|2.889510e+003
+
-
|9.116013e+006
+
-
|2.696517e+000
+
-
|9.780896e+000
+
-
|-
+
-
|AccI FblI XmiI
+
|GTMKAC
|GTMKAC
|1628
|1628
Line 1,121: Line 99:
|2.662776e+000
|2.662776e+000
|8.117925e+000
|8.117925e+000
 +
|5.515899e-002
|-
|-
-
|UbaF14I
+
|AccB7I  
-
|ccannnnntcg
+
-
|1635
+
-
|2.841793e+003
+
-
|9.855053e+006
+
-
|2.645872e+000
+
-
|1.085187e+001
+
-
|-
+
-
|XcmI
+
-
|CCANNNNNNNNNTGG
+
-
|1636
+
-
|2.840056e+003
+
-
|7.702024e+006
+
-
|2.649144e+000
+
-
|8.358782e+000
+
-
|-
+
-
|AccB7I PflMI Van91I
+
|CCANNNNNTGG
|CCANNNNNTGG
|1669
|1669
Line 1,145: Line 108:
|2.596765e+000
|2.596765e+000
|8.456608e+000
|8.456608e+000
 +
|5.515899e-002
|-
|-
-
|AhaIII DraI
+
|Acc36I  
-
|tttaaa
+
-
|1676
+
-
|2.772274e+003
+
-
|9.665006e+006
+
-
|2.584129e+000
+
-
|9.476500e+000
+
-
|-
+
-
|EciI
+
-
|GGCGGA
+
-
|1677
+
-
|2.770621e+003
+
-
|9.730691e+006
+
-
|2.584973e+000
+
-
|1.084555e+001
+
-
|-
+
-
|Bme1580I BseSI
+
-
|GKGCMC
+
-
|1690
+
-
|2.749309e+003
+
-
|7.832816e+006
+
-
|2.565089e+000
+
-
|8.837975e+000
+
-
|-
+
-
|AclI Psp1406I
+
-
|AACGTT
+
-
|1703
+
-
|2.728322e+003
+
-
|7.864863e+006
+
-
|2.544921e+000
+
-
|8.541900e+000
+
-
|-
+
-
|Asp700I MroXI PdmI XmnI
+
-
|GAANNNNTTC
+
-
|1723
+
-
|2.696652e+003
+
-
|7.734721e+006
+
-
|2.514800e+000
+
-
|7.966535e+000
+
-
|-
+
-
|BstXI
+
-
|CCANNNNNNTGG
+
-
|1765
+
-
|2.632483e+003
+
-
|6.859762e+006
+
-
|2.456091e+000
+
-
|7.521455e+000
+
-
|-
+
-
|SmlI SmoI
+
-
|CTYRAG
+
-
|1766
+
-
|2.630992e+003
+
-
|7.436425e+006
+
-
|2.453567e+000
+
-
|7.494443e+000
+
-
|-
+
-
|PvuII
+
-
|CAGCTG
+
-
|1778
+
-
|2.613235e+003
+
-
|7.212090e+006
+
-
|2.437570e+000
+
-
|8.039150e+000
+
-
|-
+
-
|MlyI PleI PpsI SchI
+
-
|GAGTC
+
-
|1793
+
-
|2.591373e+003
+
-
|7.766945e+006
+
-
|2.417178e+000
+
-
|8.520062e+000
+
-
|-
+
-
|SimI
+
-
|gggtc
+
-
|1811
+
-
|2.565617e+003
+
-
|8.348525e+006
+
-
|2.393705e+000
+
-
|9.197949e+000
+
-
|-
+
-
|AgeI AsiGI BshTI CspAI PinAI
+
-
|ACCGGT
+
-
|1816
+
-
|2.558553e+003
+
-
|7.411940e+006
+
-
|2.386564e+000
+
-
|8.609715e+000
+
-
|-
+
-
|AseI PshBI VspI
+
-
|ATTAAT
+
-
|1851
+
-
|2.510174e+003
+
-
|9.489989e+006
+
-
|2.341977e+000
+
-
|9.181907e+000
+
-
|-
+
-
|Acc36I BfuAI BspMI BveI
+
|ACCTGC
|ACCTGC
|1909
|1909
Line 1,249: Line 117:
|2.270822e+000
|2.270822e+000
|7.519384e+000
|7.519384e+000
 +
|5.515899e-002
|-
|-
-
|BglI
+
|Acc16I  
-
|GCCNNNNNGGC
+
-
|1919
+
-
|2.421226e+003
+
-
|6.760635e+006
+
-
|2.258989e+000
+
-
|7.214954e+000
+
-
|-
+
-
|BsaAI BstBAI Ppu21I
+
-
|YACGTR
+
-
|1921
+
-
|2.418705e+003
+
-
|6.137467e+006
+
-
|2.257158e+000
+
-
|6.363002e+000
+
-
|-
+
-
|Bse3DI BseMI BsrDI
+
-
|GCAATG
+
-
|1965
+
-
|2.364546e+003
+
-
|5.940162e+006
+
-
|2.205598e+000
+
-
|6.141007e+000
+
-
|-
+
-
|BseYI
+
-
|CCCAGC
+
-
|1975
+
-
|2.352573e+003
+
-
|8.338143e+006
+
-
|2.189873e+000
+
-
|9.166057e+000
+
-
|-
+
-
|BsaBI Bse8I BseJI MamI
+
-
|GATNNNNATC
+
-
|2013
+
-
|2.308163e+003
+
-
|5.508493e+006
+
-
|2.153502e+000
+
-
|5.997797e+000
+
-
|-
+
-
|Eco32I EcoRV
+
-
|GATATC
+
-
|2039
+
-
|2.278731e+003
+
-
|5.538763e+006
+
-
|2.126042e+000
+
-
|6.600887e+000
+
-
|-
+
-
|SspI
+
-
|AATATT
+
-
|2049
+
-
|2.267610e+003
+
-
|6.791023e+006
+
-
|2.115178e+000
+
-
|7.052157e+000
+
-
|-
+
-
|Alw21I Bbv12I BsiHKAI HgiAI
+
-
|GWGCWC
+
-
|2087
+
-
|2.226321e+003
+
-
|5.243449e+006
+
-
|2.077144e+000
+
-
|5.667584e+000
+
-
|-
+
-
|Acc16I AviII FspI MstI NsbI
+
|TGCGCA
|TGCGCA
|2122
|2122
Line 1,321: Line 126:
|2.041942e+000
|2.041942e+000
|5.358448e+000
|5.358448e+000
 +
|5.515899e-002
|-
|-
-
|CjeNII
+
|AccB1I  
-
|gagnnnnngt
+
-
|2146
+
-
|2.165113e+003
+
-
|5.381523e+006
+
-
|2.019105e+000
+
-
|5.801500e+000
+
-
|-
+
-
|TatI
+
-
|WGTACW
+
-
|2230
+
-
|2.083557e+003
+
-
|4.659027e+006
+
-
|1.944395e+000
+
-
|5.157068e+000
+
-
|-
+
-
|BsePI BssHII McaTI PauI
+
-
|GCGCGC
+
-
|2286
+
-
|2.032516e+003
+
-
|5.493026e+006
+
-
|1.895888e+000
+
-
|6.448675e+000
+
-
|-
+
-
|BfmI BpcI BstSFI SfcI SfeI
+
-
|CTRYAG
+
-
|2298
+
-
|2.021903e+003
+
-
|4.920094e+006
+
-
|1.886423e+000
+
-
|5.180390e+000
+
-
|-
+
-
|Tth111II
+
-
|caarca
+
-
|2381
+
-
|1.951420e+003
+
-
|4.407389e+006
+
-
|1.819404e+000
+
-
|4.670733e+000
+
-
|-
+
-
|TsoI
+
-
|TARCCA
+
-
|2425
+
-
|1.916013e+003
+
-
|4.046241e+006
+
-
|1.788041e+000
+
-
|4.653900e+000
+
-
|-
+
-
|UbaF11I
+
-
|tcgta
+
-
|2453
+
-
|1.894143e+003
+
-
|4.093796e+006
+
-
|1.767631e+000
+
-
|4.435379e+000
+
-
|-
+
-
|BseMII BspCNI
+
-
|CTCAG
+
-
|2522
+
-
|1.842320e+003
+
-
|4.469374e+006
+
-
|1.719270e+000
+
-
|4.536788e+000
+
-
|-
+
-
|ApaBI BstAPI
+
-
|gcannnnntgc
+
-
|2555
+
-
|1.818525e+003
+
-
|3.381049e+006
+
-
|1.696282e+000
+
-
|3.824712e+000
+
-
|-
+
-
|AflIII
+
-
|ACRYGT
+
-
|2588
+
-
|1.795337e+003
+
-
|3.131190e+006
+
-
|1.675039e+000
+
-
|3.692968e+000
+
-
|-
+
-
|BtgZI
+
-
|GCGATG
+
-
|2716
+
-
|1.710726e+003
+
-
|3.804899e+006
+
-
|1.596097e+000
+
-
|4.312309e+000
+
-
|-
+
-
|BstNSI NspI XceI
+
-
|RCATGY
+
-
|2783
+
-
|1.669541e+003
+
-
|2.831431e+006
+
-
|1.557672e+000
+
-
|3.216569e+000
+
-
|-
+
-
|Eco57MI
+
-
|CTGRAG
+
-
|2826
+
-
|1.644137e+003
+
-
|3.526315e+006
+
-
|1.533616e+000
+
-
|3.566480e+000
+
-
|-
+
-
|AvaII Bme18I Eco47I Psp03I SinI VpaK11AI VpaK11BI
+
-
|GGWCC
+
-
|2882
+
-
|1.612190e+003
+
-
|2.967825e+006
+
-
|1.504511e+000
+
-
|3.488525e+000
+
-
|-
+
-
|BcgI
+
-
|CGANNNNNNTGC
+
-
|2970
+
-
|1.564422e+003
+
-
|7.873454e+006
+
-
|1.459259e+000
+
-
|7.919694e+000
+
-
|-
+
-
|AcoI CfrI EaeI
+
-
|YGGCCR
+
-
|3074
+
-
|1.511494e+003
+
-
|2.483550e+006
+
-
|1.410215e+000
+
-
|2.952723e+000
+
-
|-
+
-
|TspGWI
+
-
|ACGGA
+
-
|3137
+
-
|1.481139e+003
+
-
|2.490600e+006
+
-
|1.381575e+000
+
-
|2.897403e+000
+
-
|-
+
-
|BstX2I BstYI MflI PsuI XhoII
+
-
|RGATCY
+
-
|3189
+
-
|1.456987e+003
+
-
|2.433566e+006
+
-
|1.359360e+000
+
-
|2.910970e+000
+
-
|-
+
-
|BscGI
+
-
|cccgt
+
-
|3222
+
-
|1.442065e+003
+
-
|2.590532e+006
+
-
|1.345127e+000
+
-
|3.017143e+000
+
-
|-
+
-
|AlwNI CaiI
+
-
|CAGNNNCTG
+
-
|3430
+
-
|1.354616e+003
+
-
|2.158208e+006
+
-
|1.263557e+000
+
-
|2.654344e+000
+
-
|-
+
-
|Bsp1286I MhlI SduI
+
-
|GDGCHC
+
-
|3515
+
-
|1.321858e+003
+
-
|1.852295e+006
+
-
|1.233286e+000
+
-
|2.379256e+000
+
-
|-
+
-
|HaeI
+
-
|wggccw
+
-
|3720
+
-
|1.249014e+003
+
-
|1.688760e+006
+
-
|1.164785e+000
+
-
|2.178539e+000
+
-
|-
+
-
|AccB1I BanI BshNI BspT107I HgiCI
+
|GGYRCC
|GGYRCC
|3727
|3727
Line 1,505: Line 135:
|1.162866e+000
|1.162866e+000
|2.302238e+000
|2.302238e+000
 +
|5.515899e-002
|-
|-
-
|BdaI
+
|AccII  
-
|TGANNNNNNTCA
+
-
|3750
+
-
|1.239022e+003
+
-
|4.516743e+006
+
-
|1.156267e+000
+
-
|4.597073e+000
+
-
|-
+
-
|Bsh1285I BsiEI BstMCI McrI
+
-
|CGRYCG
+
-
|3846
+
-
|1.208095e+003
+
-
|1.902313e+006
+
-
|1.127145e+000
+
-
|2.613999e+000
+
-
|-
+
-
|AcyI BsaHI BssNI BstACI Hin1I Hsp92I
+
-
|GRCGYC
+
-
|3916
+
-
|1.186499e+003
+
-
|1.661765e+006
+
-
|1.106742e+000
+
-
|2.234325e+000
+
-
|-
+
-
|BstDSI BtgI DsaI
+
-
|CCRYGG
+
-
|3992
+
-
|1.163911e+003
+
-
|1.368441e+006
+
-
|1.085671e+000
+
-
|1.902456e+000
+
-
|-
+
-
|AlfI
+
-
|GCANNNNNNTGC
+
-
|4032
+
-
|1.152364e+003
+
-
|4.358883e+006
+
-
|1.074653e+000
+
-
|4.617348e+000
+
-
|-
+
-
|AclWI AlwI BinI BspPI
+
-
|GGATC
+
-
|4040
+
-
|1.150082e+003
+
-
|1.511377e+006
+
-
|1.073020e+000
+
-
|1.959262e+000
+
-
|-
+
-
|HincII HindII
+
-
|GTYRAC
+
-
|4066
+
-
|1.142728e+003
+
-
|1.381486e+006
+
-
|1.066404e+000
+
-
|1.880952e+000
+
-
|-
+
-
|Hin4II HpyAV
+
-
|ccttc
+
-
|4343
+
-
|1.069844e+003
+
-
|1.435723e+006
+
-
|9.981580e-001
+
-
|1.851678e+000
+
-
|-
+
-
|CjuI
+
-
|caynnnnnrtg
+
-
|4363
+
-
|1.064940e+003
+
-
|1.163592e+006
+
-
|9.935824e-001
+
-
|1.640491e+000
+
-
|-
+
-
|MslI RseI SmiMI
+
-
|CAYNNNNRTG
+
-
|4574
+
-
|1.015814e+003
+
-
|1.023213e+006
+
-
|9.477481e-001
+
-
|1.421061e+000
+
-
|-
+
-
|BseGI BstF5I BtsCI FokI StsI
+
-
|GGATG
+
-
|5240
+
-
|8.867046e+002
+
-
|1.011823e+006
+
-
|8.270992e-001
+
-
|1.437937e+000
+
-
|-
+
-
|TsuI
+
-
|gcgac
+
-
|5513
+
-
|8.427956e+002
+
-
|8.815571e+005
+
-
|7.865046e-001
+
-
|1.322517e+000
+
-
|-
+
-
|FauI SmuI
+
-
|CCCGC
+
-
|5580
+
-
|8.326760e+002
+
-
|8.940201e+005
+
-
|7.763441e-001
+
-
|1.306843e+000
+
-
|-
+
-
|AcsI ApoI XapI
+
-
|RAATTY
+
-
|5725
+
-
|8.115864e+002
+
-
|7.501722e+005
+
-
|7.573799e-001
+
-
|1.032495e+000
+
-
|-
+
-
|CseI HgaI
+
-
|GACGC
+
-
|5863
+
-
|7.924837e+002
+
-
|7.943168e+005
+
-
|7.392120e-001
+
-
|1.174046e+000
+
-
|-
+
-
|Bse118I BsrFI BssAI Cfr10I
+
-
|RCCGGY
+
-
|5917
+
-
|7.852513e+002
+
-
|7.874513e+005
+
-
|7.326348e-001
+
-
|1.297672e+000
+
-
|-
+
-
|BetI BsaWI
+
-
|wccggw
+
-
|5967
+
-
|7.786714e+002
+
-
|6.767500e+005
+
-
|7.263281e-001
+
-
|1.073097e+000
+
-
|-
+
-
|MboII
+
-
|GAAGA
+
-
|6191
+
-
|7.504978e+002
+
-
|8.449782e+005
+
-
|7.003715e-001
+
-
|1.117478e+000
+
-
|-
+
-
|BceAI BcefI
+
-
|ACGGC
+
-
|6282
+
-
|7.396262e+002
+
-
|6.490299e+005
+
-
|6.902260e-001
+
-
|1.022955e+000
+
-
|-
+
-
|TspDTI
+
-
|ATGAA
+
-
|6391
+
-
|7.270117e+002
+
-
|7.461011e+005
+
-
|6.784541e-001
+
-
|9.530866e-001
+
-
|-
+
-
|BccI
+
-
|CCATC
+
-
|6485
+
-
|7.164737e+002
+
-
|6.041178e+005
+
-
|6.686199e-001
+
-
|9.270303e-001
+
-
|-
+
-
|BstH2I HaeII LpnI
+
-
|RGCGCY
+
-
|6542
+
-
|7.102311e+002
+
-
|6.090081e+005
+
-
|6.624885e-001
+
-
|9.696950e-001
+
-
|-
+
-
|BstDEI DdeI HpyF3I
+
-
|CTNAG
+
-
|6816
+
-
|6.816802e+002
+
-
|5.491098e+005
+
-
|6.361502e-001
+
-
|7.758845e-001
+
-
|-
+
-
|HaeIV
+
-
|gaynnnnnrtc
+
-
|6930
+
-
|6.704664e+002
+
-
|1.324798e+006
+
-
|6.248196e-001
+
-
|1.486583e+000
+
-
|-
+
-
|BscAI LweI SfaNI
+
-
|gcatc
+
-
|7036
+
-
|6.603655e+002
+
-
|4.956154e+005
+
-
|6.162592e-001
+
-
|8.167591e-001
+
-
|-
+
-
|AspS9I AsuI BmgT120I Cfr13I FmuI Sau96I UnbI
+
-
|GGNCC
+
-
|7050
+
-
|6.590542e+002
+
-
|4.996169e+005
+
-
|6.150355e-001
+
-
|8.280900e-001
+
-
|-
+
-
|PfeI TfiI
+
-
|GAWTC
+
-
|7176
+
-
|6.474822e+002
+
-
|4.303366e+005
+
-
|6.042363e-001
+
-
|7.077395e-001
+
-
|-
+
-
|CdiI
+
-
|catcg
+
-
|7201
+
-
|6.452343e+002
+
-
|4.841370e+005
+
-
|6.021386e-001
+
-
|7.979343e-001
+
-
|-
+
-
|Bse1I BseNI BsrI BsrSI
+
-
|ACTGG
+
-
|7318
+
-
|6.349183e+002
+
-
|6.216771e+005
+
-
|5.922383e-001
+
-
|8.868716e-001
+
-
|-
+
-
|AsuHPI HphI SspD5I
+
-
|GGTGA
+
-
|7406
+
-
|6.273740e+002
+
-
|4.696033e+005
+
-
|5.854712e-001
+
-
|7.612960e-001
+
-
|-
+
-
|BspNCI
+
-
|ccaga
+
-
|7513
+
-
|6.184390e+002
+
-
|5.182914e+005
+
-
|5.769999e-001
+
-
|8.034752e-001
+
-
|-
+
-
|NmuCI Tsp45I
+
-
|GTSAC
+
-
|7787
+
-
|5.966781e+002
+
-
|3.712461e+005
+
-
|5.568255e-001
+
-
|6.513749e-001
+
-
|-
+
-
|CjePI
+
-
|ccannnnnnntc
+
-
|8034
+
-
|5.783336e+002
+
-
|1.083957e+006
+
-
|5.390839e-001
+
-
|1.255599e+000
+
-
|-
+
-
|MnlI
+
-
|CCTC
+
-
|8050
+
-
|5.771841e+002
+
-
|4.180919e+005
+
-
|5.386335e-001
+
-
|6.309461e-001
+
-
|-
+
-
|MspA1I NspBII
+
-
|CMGCKG
+
-
|8246
+
-
|5.634650e+002
+
-
|3.668327e+005
+
-
|5.255882e-001
+
-
|6.627169e-001
+
-
|-
+
-
|BmiI BspLI NlaIV PspN4I
+
-
|GGNNCC
+
-
|8430
+
-
|5.511663e+002
+
-
|3.561167e+005
+
-
|5.143535e-001
+
-
|6.652940e-001
+
-
|-
+
-
|BbvI BseXI BstV1I
+
-
|GCAGC
+
-
|8860
+
-
|5.244167e+002
+
-
|3.423479e+005
+
-
|4.892777e-001
+
-
|6.025490e-001
+
-
|-
+
-
|AsuC2I BcnI BpuMI CauII EcoHI NciI
+
-
|CCSGG
+
-
|9003
+
-
|5.160871e+002
+
-
|3.113374e+005
+
-
|4.816172e-001
+
-
|5.973903e-001
+
-
|-
+
-
|CjeI
+
-
|ccannnnnngt
+
-
|9120
+
-
|5.094662e+002
+
-
|8.303013e+005
+
-
|4.752193e-001
+
-
|1.026472e+000
+
-
|-
+
-
|Hin4I
+
-
|GAYNNNNNVTC
+
-
|9162
+
-
|5.071308e+002
+
-
|7.442203e+005
+
-
|4.729317e-001
+
-
|9.083929e-001
+
-
|-
+
-
|AspCNI
+
-
|gccgc
+
-
|9407
+
-
|4.939228e+002
+
-
|3.506401e+005
+
-
|4.607207e-001
+
-
|6.409990e-001
+
-
|-
+
-
|TspRI
+
-
|CASTG
+
-
|10378
+
-
|4.477098e+002
+
-
|2.162163e+005
+
-
|4.178069e-001
+
-
|4.377363e-001
+
-
|-
+
-
|Hpy99I
+
-
|CGWCG
+
-
|10379
+
-
|4.476666e+002
+
-
|2.671630e+005
+
-
|4.176703e-001
+
-
|5.348236e-001
+
-
|-
+
-
|HinfI
+
-
|GANTC
+
-
|10764
+
-
|4.316548e+002
+
-
|1.914271e+005
+
-
|4.028242e-001
+
-
|4.018725e-001
+
-
|-
+
-
|BsaJI BseDI BssECI SecI
+
-
|CCNNGG
+
-
|11546
+
-
|4.024192e+002
+
-
|1.722814e+005
+
-
|3.754547e-001
+
-
|4.008145e-001
+
-
|-
+
-
|AfaI Csp6I CviQI PabI RsaI
+
-
|GTAC
+
-
|12048
+
-
|3.856517e+002
+
-
|1.659786e+005
+
-
|3.598938e-001
+
-
|3.919234e-001
+
-
|-
+
-
|AjnI BptI BseBI BstNI BstOI Bst2UI EcoRII MvaI Psp6I PspGI
+
-
|CCWGG
+
-
|12050
+
-
|3.855877e+002
+
-
|1.501643e+005
+
-
|3.597510e-001
+
-
|3.667922e-001
+
-
|-
+
-
|Hpy188I
+
-
|TCNGA
+
-
|12183
+
-
|3.813783e+002
+
-
|1.633600e+005
+
-
|3.558237e-001
+
-
|3.627076e-001
+
-
|-
+
-
|BshFI BsnI BspANI BsuRI HaeIII PhoI
+
-
|GGCC
+
-
|12631
+
-
|3.678515e+002
+
-
|1.537638e+005
+
-
|3.432824e-001
+
-
|3.625913e-001
+
-
|-
+
-
|Hpy8I MjaIV
+
-
|GTNNAC
+
-
|12999
+
-
|3.574376e+002
+
-
|1.284045e+005
+
-
|3.335641e-001
+
-
|3.315638e-001
+
-
|-
+
-
|AluI
+
-
|AGCT
+
-
|13349
+
-
|3.480659e+002
+
-
|1.262593e+005
+
-
|3.248183e-001
+
-
|3.155220e-001
+
-
|-
+
-
|AfiI Bsc4I BseLI BsiYI BslI
+
-
|CCNNNNNNNGG
+
-
|14283
+
-
|3.253050e+002
+
-
|1.138314e+005
+
-
|3.035777e-001
+
-
|3.202414e-001
+
-
|-
+
-
|HpyCH4IV MaeII TaiI
+
-
|ACGT
+
-
|14552
+
-
|3.192916e+002
+
-
|1.107344e+005
+
-
|2.979659e-001
+
-
|2.997746e-001
+
-
|-
+
-
|CviAII FaeI FatI Hin1II Hsp92II NlaIII
+
-
|CATG
+
-
|15347
+
-
|3.027518e+002
+
-
|9.859123e+004
+
-
|2.824656e-001
+
-
|2.674646e-001
+
-
|-
+
-
|EsaBC3I TaqI
+
-
|tcga
+
-
|15482
+
-
|3.001119e+002
+
-
|1.032079e+005
+
-
|2.800672e-001
+
-
|2.826451e-001
+
-
|-
+
-
|MaeIII
+
-
|GTNAC
+
-
|16065
+
-
|2.892208e+002
+
-
|8.772337e+004
+
-
|2.699035e-001
+
-
|2.616844e-001
+
-
|-
+
-
|Hpy178III Hpy188III
+
-
|tcnnga
+
-
|16091
+
-
|2.887535e+002
+
-
|8.860696e+004
+
-
|2.694674e-001
+
-
|2.577744e-001
+
-
|-
+
-
|Sth132I
+
-
|cccg
+
-
|16382
+
-
|2.836242e+002
+
-
|9.812628e+004
+
-
|2.646807e-001
+
-
|2.720435e-001
+
-
|-
+
-
|ApeKI TseI
+
-
|GCWGC
+
-
|17203
+
-
|2.700885e+002
+
-
|8.669780e+004
+
-
|2.519909e-001
+
-
|2.553552e-001
+
-
|-
+
-
|Bst4CI HpyCH4III TaaI Tsp4CI
+
-
|ACNGT
+
-
|17420
+
-
|2.667240e+002
+
-
|7.576156e+004
+
-
|2.489093e-001
+
-
|2.433394e-001
+
-
|-
+
-
|TauI
+
-
|GCSGC
+
-
|18657
+
-
|2.490396e+002
+
-
|8.737231e+004
+
-
|2.323525e-001
+
-
|2.623152e-001
+
-
|-
+
-
|BfuCI Bsp143I BssMI BstKTI BstMBI ChaI DpnI DpnII Kzo9I MalI MboI NdeII Sau3AI
+
-
|GATC
+
-
|19146
+
-
|2.426790e+002
+
-
|7.186618e+004
+
-
|2.264703e-001
+
-
|2.281549e-001
+
-
|-
+
-
|Sse9I TasI Tsp509I TspEI
+
-
|AATT
+
-
|19652
+
-
|2.364305e+002
+
-
|7.811461e+004
+
-
|2.206391e-001
+
-
|2.078932e-001
+
-
|-
+
-
|CviRI HpyCH4V
+
-
|tgca
+
-
|19774
+
-
|2.349718e+002
+
-
|5.707172e+004
+
-
|2.192778e-001
+
-
|2.044814e-001
+
-
|-
+
-
|Bme1390I BmrFI BssKI BstSCI MspR9I ScrFI StyD4I
+
-
|CCNGG
+
-
|21053
+
-
|2.206969e+002
+
-
|5.073408e+004
+
-
|2.059564e-001
+
-
|1.967021e-001
+
-
|-
+
-
|MseI Tru1I Tru9I
+
-
|TTAA
+
-
|21194
+
-
|2.192286e+002
+
-
|6.332636e+004
+
-
|2.045862e-001
+
-
|1.890678e-001
+
-
|-
+
-
|BsiSI HapII HpaII MspI Sth302II
+
-
|CCGG
+
-
|24357
+
-
|1.907596e+002
+
-
|4.594984e+004
+
-
|1.780186e-001
+
-
|1.805761e-001
+
-
|-
+
-
|AccII Bsh1236I BstFNI BstUI FnuDII MvnI SelI
+
|CGCG
|CGCG
|26267
|26267
Line 2,049: Line 144:
|1.650740e-001
|1.650740e-001
|1.738460e-001
|1.738460e-001
-
|-
+
|5.515899e-002
-
|AciI BspACI SsiI
+
-
|CCGC
+
-
|27622
+
-
|1.682113e+002
+
-
|3.830414e+004
+
-
|1.569763e-001
+
-
|1.578274e-001
+
-
|-
+
-
|BstC8I Cac8I
+
-
|GCNNGC
+
-
|27697
+
-
|1.677558e+002
+
-
|3.644334e+004
+
-
|1.565513e-001
+
-
|1.555168e-001
+
-
|-
+
-
|BstMWI HpyF10VI MwoI
+
-
|GCNNNNNNNGC
+
-
|30731
+
-
|1.511936e+002
+
-
|2.784717e+004
+
-
|1.410953e-001
+
-
|1.379828e-001
+
-
|-
+
-
|AspLEI BstHHI CfoI GlaI HhaI Hin6I HinP1I HspAI
+
-
|GCGC
+
-
|32830
+
-
|1.415270e+002
+
-
|2.844485e+004
+
-
|1.320439e-001
+
-
|1.324618e-001
+
-
|-
+
-
|BisI BlsI BthCI Fnu4HI Fsp4HI GluI ItaI SatI
+
-
|GCNGC
+
-
|34103
+
-
|1.362441e+002
+
-
|2.407428e+004
+
-
|1.271149e-001
+
-
|1.254459e-001
+
-
|-
+
-
|SetI
+
-
|ASST
+
-
|54885
+
-
|8.465577e+001
+
-
|6.841718e+003
+
-
|7.900155e-002
+
-
|7.447433e-002
+
-
|-
+
-
|CviJI CviKI-1
+
-
|RGCY
+
-
|61298
+
-
|7.579908e+001
+
-
|5.705150e+003
+
-
|7.073640e-002
+
-
|6.703896e-002
+
|}
|}

Revision as of 19:45, 6 October 2008

Statistic on restriction enzymes cutting on genome
Restriction Enzyme(s) Recognition Site Number of fragments Average size of fragments (Kbp) Variance size of fragments (Kbp) Average number of genes per fragments Variance number of genes per fragments Percentage of fragments with one or more essential genes
AbsI CCTCGAGG 8 5.807915e+005 2.485291e+011 4.285000e+002 1.724534e+005 5.515899e-002
Acc65I GGTACC 517 8.987103e+003 9.802089e+007 8.382979e+000 9.524064e+001 5.515899e-002
AarI CACCTGC 568 8.180162e+003 7.270785e+007 7.609155e+000 7.131082e+001 5.515899e-002
AatI AGGCCT 604 7.692603e+003 7.400240e+007 7.167219e+000 7.203998e+001 5.515899e-002
AatII GACGTC 713 6.516595e+003 4.402359e+007 6.077139e+000 4.286623e+001 5.515899e-002
AasI GACNNNNNNGTC 732 6.347448e+003 4.771756e+007 5.922131e+000 4.714988e+001 5.515899e-002
AccIII TCCGGA 918 5.061364e+003 3.062768e+007 4.712418e+000 2.924981e+001 5.515899e-002
AccBSI CCGCTC 981 4.736322e+003 2.652703e+007 4.417941e+000 2.645168e+001 5.515899e-002
AceIII cagctc 1541 3.015141e+003 1.147054e+007 2.813108e+000 1.164687e+001 5.515899e-002
AccI GTMKAC 1628 2.854012e+003 7.904766e+006 2.662776e+000 8.117925e+000 5.515899e-002
AccB7I CCANNNNNTGG 1669 2.783902e+003 7.699332e+006 2.596765e+000 8.456608e+000 5.515899e-002
Acc36I ACCTGC 1909 2.433909e+003 6.585783e+006 2.270822e+000 7.519384e+000 5.515899e-002
Acc16I TGCGCA 2122 2.189600e+003 4.962276e+006 2.041942e+000 5.358448e+000 5.515899e-002
AccB1I GGYRCC 3727 1.246668e+003 1.760993e+006 1.162866e+000 2.302238e+000 5.515899e-002
AccII CGCG 26267 1.768886e+002 4.605966e+004 1.650740e-001 1.738460e-001 5.515899e-002
Retrieved from "http://2008.igem.org/Team:ETH_Zurich/Test2"