Team:Heidelberg/Modeling/Chemotaxis

From 2008.igem.org

(Difference between revisions)
(Simulation movies)
(Simulation movies)
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** prey evenly distributed
** prey evenly distributed
** 1/1000 AI-2 production rate
** 1/1000 AI-2 production rate
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* movie 4 (3D, 2D)
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* movie 4 ([https://static.igem.org/mediawiki/2008/1/15/HD_5PDE_a_4-fold-chemotaxis_3D.ogg 3D], [https://static.igem.org/mediawiki/2008/9/9b/HD_5PDE_a_4-fold-chemotaxis_2D.ogg 2D])
** 5-PDE system
** 5-PDE system
** killer cells positioned in corner
** killer cells positioned in corner

Revision as of 13:21, 29 October 2008


Chemotaxis - Killing Model

Our detailed documentation "Model for Sensing Network and the Production of Colicins as the Killing Mechanism" includes the following information:

  • Introduction into the biological sytem
  • Chemotaxis model
  • Parameter estimation
  • Numerical methods
  • Results
  • Conclusions

You can download the documentation here and the summary of the modeling project can be downloaded here.


Simulation movies

Below is a list of simulation movies. Specific parameters can be taken from our documentation.

  • movie 1 (3D, 2D)
    • 4-PDE system
    • killer cells positioned in corner
    • prey evenly distributed
  • movie 2 (3D, 2D)
    • 5-PDE system
    • killer cells positioned in corner
  • movie 3 (3D, 2D)
    • 5-PDE system
    • killer cells positioned in corner
    • prey evenly distributed
    • 1/1000 AI-2 production rate
  • movie 4 (3D, 2D)
    • 5-PDE system
    • killer cells positioned in corner
    • prey evenly distributed
    • 4-fold chemotactic activity towards AI-2
  • movie 5 (3D, 2D)
    • 5-PDE system
    • killer cells evenly distributed
    • prey positioned in center