Team:KULeuven/Model/Filter

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=== Sensitivity Analysis ===
=== Sensitivity Analysis ===
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[[Image:Sens Filter.png|center]]

Revision as of 13:24, 7 August 2008

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Pictogram filter.png

Contents

Filter

Position in the system

Describing the system

Filter BioBrick.jpg

ODE's

Parameters

Parameter values Filter
Name Value Comments Reference
Degradation rates
dpT7_tag 0.00155 s-1 tag added to speed up degradation of otherwise too stable T7 polymerase link
dmRNA_RIBOKEY 0.00462 s-1 link
dclosed_mRNA_T7 0.00462 s-1 link
dopen_mRNA_T7 0.00231 s-1 link
dopen_mRNA_T7_complex 0.00231 s-1 link
Equilibrium constants
Keq_1 0,015 [M] closed and open mRNA
Keq_2 0.0212 [M] closed and key (binded with ribokey) complex mRNA
Transcription rates
kmRNA_RIBOKEY Input dependent
kmRNA_T7 0,0011 s-1

Models

CellDesigner (SBML file)

filter
filter

Matlab (SBML file)

Matlab diagram for the filter system:

Filter Matlab.jpg
Sim filter short.jpg Sim filter long.jpg

Sensitivity Analysis

Sens Filter.png