"
Team:KULeuven/Model/Kinetic Constants
From 2008.igem.org
(Difference between revisions)
(→HSL stuff) |
(→T7 RNAP) |
||
| Line 13: | Line 13: | ||
*[http://www.openwetware.org/wiki/IGEM:Tsinghua/2007/Projects/RAP data T7 team Tsinghua 2007] | *[http://www.openwetware.org/wiki/IGEM:Tsinghua/2007/Projects/RAP data T7 team Tsinghua 2007] | ||
*[http://www.jbc.org/cgi/reprint/281/47/35677 Transient State Kinetics of Transcription Elongation by T7 RNA Polymerase] | *[http://www.jbc.org/cgi/reprint/281/47/35677 Transient State Kinetics of Transcription Elongation by T7 RNA Polymerase] | ||
| + | *[http://www.jbc.org/cgi/content/full/279/5/3239#FIG2 Single molecule studies of T7 RNA polymerase] | ||
===LacI - LuxI=== | ===LacI - LuxI=== | ||
Revision as of 07:32, 14 August 2008
dock/undock dropdown
Contents |
Kinetic Constants
ETHZ list of parameters
mRNA decay
T7 RNAP
- Initiation of Transcription by T7 RNA Polymerase at Its Natural Promoters
- Kinetic and Thermodynamic Basis of Promoter Strength: Multiple Steps of Transcription Initiation by T7 RNA Polymerase Are Modulated by the Promoter Sequence
- data T7 team Tsinghua 2007
- Transient State Kinetics of Transcription Elongation by T7 RNA Polymerase
- Single molecule studies of T7 RNA polymerase
LacI - LuxI
LuxI, LuxR, mRNALuxI, mRNALuxR decay
HSL stuff
- Rapid Acyl-Homoserine Lactone Quorum Signal Biodegradation in Diverse Soils Fig 6: half-life 185 h ==> decay rate 1.02 * 10^-6 s^-1 ==> 0.00889 nM/h
Diffusion
OmpR, OmpF
- A simulation model of Escherichia coli osmoregulatory switch using E-CELL system (Relevance: High), bekijk pg.11/13
- Transcription Regulation of ompF and ompC by a Single Transcription Factor, OmpR (Relevance: Medium)
- Transmembrane Signal Transduction and Osmoregulation in Escherichia coli: Functional Importance of the Transmembrane Regions of Membrane-Located Protein Kinase, EnvZ (Relevance:?), geen toegang tenzij account
- DNA-Binding Properties of the Transcription Activator (OmpR) for the Upstream Sequences of ompF in Escherichia coli Are Altered by envZ Mutations and Medium Osmolarity (Relevance: Low)
- A Distant Upstream Site Involved in the Negative Regulation of the Escherichia coli ompF Gene (Relevance: ?), voor repressor regulatie van OmpF door OmpR
- micF Antisense RNA Has a Major Role in Osmoregulation of OmpF in Escherichia coli (Relevance: Low), invloed 'Antisense RNA' op OmpF regulatie, hmm...
Psid met P2ogr promotor
Constitutive promoters
- Estimated transcription rate for J23105:[1]
- Scale other transcription rate with table in parts registry.
- Estimate the rate of transcription from a constitutive promotor family member.
E. coli transcription rates
Paper about the calculated transcription rates for every E.coli ORF
Tables with the calculated transcription rates for every E.coli ORF
