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Team:KULeuven/Model/Kinetic Constants
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===ETHZ list of parameters=== | ===ETHZ list of parameters=== | ||
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| + | <tr style="vertical-align:top;"><td>[1]</td><td style="padding-left:4pt;">“ETHZ/Parameters - IGEM07”; http://parts.mit.edu/igem07/index.php/ETHZ/Parameters.</td></tr> | ||
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===mRNA decay=== | ===mRNA decay=== | ||
*[http://www.pubmedcentral.nih.gov/picrender.fcgi?artid=124983&blobtype=pdf Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using two-color fluorescent DNA microarrays] | *[http://www.pubmedcentral.nih.gov/picrender.fcgi?artid=124983&blobtype=pdf Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using two-color fluorescent DNA microarrays] | ||
Revision as of 10:17, 11 September 2008
dock/undock dropdown
Contents |
ETHZ list of parameters
| [1] | “ETHZ/Parameters - IGEM07”; http://parts.mit.edu/igem07/index.php/ETHZ/Parameters. |
mRNA decay
T7 RNAP
- Initiation of Transcription by T7 RNA Polymerase at Its Natural Promoters
- Kinetic and Thermodynamic Basis of Promoter Strength: Multiple Steps of Transcription Initiation by T7 RNA Polymerase Are Modulated by the Promoter Sequence
- data T7 team Tsinghua 2007
- Transient State Kinetics of Transcription Elongation by T7 RNA Polymerase
- Single molecule studies of T7 RNA polymerase
LacI - LuxI
LuxI, LuxR, mRNALuxI, mRNALuxR decay
HSL stuff
- Rapid Acyl-Homoserine Lactone Quorum Signal Biodegradation in Diverse Soils Fig 6: half-life 185 h ==> decay rate 1.02 * 10^-6 s^-1 ==> 0.00889 nM/h
Diffusion
OmpR, OmpF
- A simulation model of Escherichia coli osmoregulatory switch using E-CELL system (Relevance: High), bekijk pg.11/13
- Transcription Regulation of ompF and ompC by a Single Transcription Factor, OmpR (Relevance: Medium)
- Transmembrane Signal Transduction and Osmoregulation in Escherichia coli: Functional Importance of the Transmembrane Regions of Membrane-Located Protein Kinase, EnvZ (Relevance:?), geen toegang tenzij account
- DNA-Binding Properties of the Transcription Activator (OmpR) for the Upstream Sequences of ompF in Escherichia coli Are Altered by envZ Mutations and Medium Osmolarity (Relevance: Low)
- A Distant Upstream Site Involved in the Negative Regulation of the Escherichia coli ompF Gene (Relevance: ?), voor repressor regulatie van OmpF door OmpR
- micF Antisense RNA Has a Major Role in Osmoregulation of OmpF in Escherichia coli (Relevance: Low), invloed 'Antisense RNA' op OmpF regulatie, hmm...
Psid met P2ogr promotor
Constitutive promoters
- Estimated transcription rate for J23105:[1]
- Scale other transcription rate with table in parts registry.
- Estimate the rate of transcription from a constitutive promotor family member.
E. coli transcription rates
Paper about the calculated transcription rates for every E.coli ORF
Tables with the calculated transcription rates for every E.coli ORF
