Team:KULeuven/Model/Kinetic Constants

From 2008.igem.org

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(T7 RNAP)
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*[http://www.jbc.org/cgi/content/full/279/14/13645#TBL2 Lactonase mediated HSL degradation (hydrolysis)]
*[http://www.jbc.org/cgi/content/full/279/14/13645#TBL2 Lactonase mediated HSL degradation (hydrolysis)]
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=====Diffusion=====
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====Diffusion====
*[http://jb.asm.org/cgi/content/full/185/5/1485 AHL diffusion model]
*[http://jb.asm.org/cgi/content/full/185/5/1485 AHL diffusion model]

Revision as of 15:40, 21 August 2008

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Contents

Kinetic Constants

ETHZ list of parameters

mRNA decay

T7 RNAP

LacI - LuxI

LuxI, LuxR, mRNALuxI, mRNALuxR decay

HSL stuff

Diffusion

OmpR, OmpF

Psid met P2ogr promotor

Constitutive promoters

  • Estimated transcription rate for J23105:[1]
  • Scale other transcription rate with table in parts registry.
  • Estimate the rate of transcription from a constitutive promotor family member.
Estimates for the rate of transcription from the constitutive promotor family members. X is the GFP fluorescence in arbitrary units according to the Registry. Y is the number of mRNA's produced per second from that promotor

E. coli transcription rates

Paper about the calculated transcription rates for every E.coli ORF
Tables with the calculated transcription rates for every E.coli ORF