Team:Paris/Analysis/Math+Sim
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[[Image:YFP.jpg|center]] | [[Image:YFP.jpg|center]] | ||
[[Image:eqn_EnvZ-RFP.jpg|center]] | [[Image:eqn_EnvZ-RFP.jpg|center]] | ||
+ | |||
+ | == Parameters' changes == | ||
+ | |||
+ | analysis of core system (biocham) | ||
+ | |||
+ | <center> | ||
+ | {| | ||
+ | |- style="background: #649CD7; text-align: center;" | ||
+ | | Description | ||
+ | | System | ||
+ | | Evaluation | ||
+ | | Observations | ||
+ | |- style="background: #dddddd;" | ||
+ | | style="background: #D4E2EF;"|Core system | ||
+ | | style=" text-align:center;" |[[Image:Core_system_mini.png|center]] | ||
+ | | style=" text-align:center;" |[[Image:orgsad.gif]] | ||
+ | | Non oscillating system | ||
+ | |- style="background: #dddddd;" | ||
+ | | style="background: #D4E2EF;" |Removing the activation of envZ via FlhDC | ||
+ | | style=" text-align:center;" |[[Image:Core_system_delta_flhDC_envZ_dotted_mini.png]] | ||
+ | | style=" text-align:center;" |[[Image:Orgstar.gif]] | ||
+ | | Modest damped oscillations | ||
+ | |- style="background: #dddddd;" | ||
+ | | style="background: #D4E2EF;" |Removing the auto-activation of flia | ||
+ | | style=" text-align:center;" | [[Image:Core_system_delta_flia_flia.png]] | ||
+ | |style=" text-align:center;" | [[Image:Orgstar.gif]][[Image:Orgstar.gif]] | ||
+ | | Damped oscillations | ||
+ | |- style="background: #dddddd;" | ||
+ | | style="background: #D4E2EF;" |Removing both: the activation of envZ via FlhDC and the auto-activation of flia | ||
+ | | style=" text-align:center;" | [[Image:Core_system_delta_flhDC_envZ_delta_flia_flia.png]] | ||
+ | | style=" text-align:center;" |[[Image:Orgstar.gif]][[Image:Orgstar.gif]] | ||
+ | | Damped oscillations with greater amplitud | ||
+ | |- style="background: #dddddd;" | ||
+ | | style="background: #D4E2EF;" | Enhancing the inhibition of FlhDC via envZ; Removing both: the activation of envZ via FlhDC and the auto-activation of flia | ||
+ | | style=" text-align:center;" | [[Image:Core_system_envZ_plus.png]] | ||
+ | |style=" text-align:center;" | [[Image:Orgstar.gif]][[Image:Orgstar.gif]][[Image:Orgstar.gif]] | ||
+ | | Conserved oscillations | ||
+ | |- style="background: #dddddd;" | ||
+ | !colspan="4" | Synchronized oscillations should be searched taking the last system as a starting point. | ||
+ | |}</center> |
Revision as of 10:13, 26 October 2008
Mathematical analysis and simulations
FIFO
where CFP, YFP, and RFP will be denoted below as respectively Z1,Z2 and Z3.
We have implemented this system using Matlab (see the corresponding codes)
Indeed, we may see that there is a LIFO behavior rather than the FIFO we expect...
Oscillations
We finally obtained the following equations : Parameters' changesanalysis of core system (biocham) |