Team:Paris/Modeling/Bibliography

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All the parameters we might have to introduce in our models

Diag expr time.jpg expression of the fl-genes observed in [1]

Contents

flhDC + fliA → pfliA → fliA → ∅

flhDC + fliA → pfliL → Z1 → ∅

the contributions of flhDC and fliA in the activity of pfliL appear to be a SUM [2] :

act_pfliL(flhDC,fliA) = act_pfliL(flhDC,0)+act_pfliL(0,fliA)


is it the same for the other promoters under the influence of both flhDC and fliA ?

flhDC + fliA → pflgA → Z2 → ∅

flhDC + fliA → pflgB → Z2 → ∅

flhDC + fliA → pflhB → Z3 → ∅

lasI → 3OC12HSL → ∅

d[HSL]/dt = -D * Grad²([HSL])

lasR → Rec → ∅

3OC12HSL + Rec → HSL-Rec → ∅

HSL-Rec + pRep → TetR → ∅

∅ → aTc → ∅

TetR + aTc → pTet → flhDC → ∅

OmpR* → pflhDC → flhDC → ∅

References

[1] Ordering Genes in a Flagella Pathway by Analysis of Expression Kinetics from Living Bacteria
S. Kalir, J. McClure, K. Pabbaraju, C. Southward, M. Ronen, S. Leibler, M. G. Surette, U. Alon,