Team:Paris/Modeling/Molecular Reactions

From 2008.igem.org

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[[Image:compl.jpg|110px]] means ''n<sub>1</sub>'' molecules of ''FlhDC'' complexed with a ''pFliA'' promoter<br><br>
[[Image:compl.jpg|110px]] means ''n<sub>1</sub>'' molecules of ''FlhDC'' complexed with a ''pFliA'' promoter<br><br>
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<html><iframe height="300" width="600" src="https://static.igem.org/mediawiki/2008/3/3a/Complexation_Reactions.pdf"></iframe></html>
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<div style="text-align: center">
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{{Paris/Toggle|Complexation Reactions|Team:Paris/Modeling/Compl_React}}
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| width="25%" | '''On the Example :''' <br>
| width="25%" | '''On the Example :''' <br>
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[[Image:compl.jpg|110px]] means ''n<sub>1</sub>'' molecules of ''FlhDC'' complexed with a ''pFliA'' promoter<br><br>
[[Image:compl.jpg|110px]] means ''n<sub>1</sub>'' molecules of ''FlhDC'' complexed with a ''pFliA'' promoter<br><br>
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<html><iframe height="300" width="600" src="https://static.igem.org/mediawiki/2008/e/ef/Production_Reactions.pdf"></iframe></html>
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<div style="text-align: center">
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{{Paris/Toggle|Production Reactions|Team:Paris/Modeling/Prod_React}}
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</div>
| width="25%" | '''On the Example :''' <br>
| width="25%" | '''On the Example :''' <br>
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| width="75%" | '''Degradation/Dilution Reactions''' <br><br>
| width="75%" | '''Degradation/Dilution Reactions''' <br><br>
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<html><iframe height="300" width="600" src="https://static.igem.org/mediawiki/2008/f/f7/Degradation_Dilution.pdf"></iframe></html>
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<div style="text-align: center">
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{{Paris/Toggle|Degradation/Dilution Reactions|Team:Paris/Modeling/D_React}}
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| width="25%" | '''On the Example :''' <br>
| width="25%" | '''On the Example :''' <br>
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<div style="text-align: right">For complete PDF with all Reactions and Numbered References : [[https://static.igem.org/mediawiki/2008/6/61/Equa_Core_System.pdf|complete list of reactions/equations]] </div>
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<div style="text-align: right">For complete PDF with all Reactions and Numbered References : [https://static.igem.org/mediawiki/2008/6/61/Equa_Core_System.pdf complete list of reactions and equations] </div>
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Revision as of 17:02, 29 October 2008

Molecular Reactions


We show here the elementary reactions from wich we started. They intend to be "exhaustives" in the sense that every steps of the system is described. Each of those reactions has to be "mathematically interpreted", in a model which accounts for the important phenomenons, and, in the same time, which allows us to find experimentally every involved parameters.


The system we are studying is the "Core System with three genes of interest" that we can represent in the scheme just below (with all alternatives pFlhDC or pTet and TetR or envZ or OmpR*)

↓ Core System ↑


core system

The "core systeme"
* Every interactions are modelised by a ƒX function
* The detailed example FP1 = ƒ5([FlhDC],[FliA]) is surrounded in red


Complexation Reactions

The double triangle (><) is a symbol for complexations :
Compl.jpg means n1 molecules of FlhDC complexed with a pFliA promoter

↓ Complexation Reactions ↑


Equa Complex.jpg
On the Example :

How given amounts of FlhDC and FliA would produce FP1 ?

  • FlhDC and FliA bind to pFliL :

DCiLcompl.jpg

AiLcompl.jpg

Production Reactions

The double triangle (><) is a symbol for complexations :
Compl.jpg means n1 molecules of FlhDC complexed with a pFliA promoter

↓ Production Reactions ↑


Prod React.jpg
On the Example :

How given amounts of FlhDC and FliA would produce FP1 ?

  • FlhDC><pFliL and FliA><pFliL causes "production" of FP1 :



BFP1.jpg

Degradation/Dilution Reactions

↓ Degradation/Dilution Reactions ↑


D React.jpg
On the Example :

How given amounts of FlhDC and FliA would produce FP1 ?

  • FP1 disappears because of its degradation and dilution :

DFP1.jpg

For complete PDF with all Reactions and Numbered References : complete list of reactions and equations


<Back to "Workflow on an Example"|