Team:Paris/Modeling/f3

(Difference between revisions)

Revision as of 23:44, 29 September 2008

param	signification	unit	value
[expr(pFlhDC)]	expression rate of pFlhDC with RBS E0032	nM.min^-1	see "findparam" need for 20 + 20 measures and 5x5 measures for the SUM?
γ_GFP	dilution-degradation rate of GFP(mut3b)	min^-1	0.0198
[GFP]	GFP concentration at steady-state	nM	need for 20 + 20 measures and 5x5 measures for the SUM?
(fluorescence)	value of the observed fluorescence	au	need for 20 + 20 measures and 5x5 measures for the SUM?
conversion	conversion ration between fluorescence and concentration	nM.au^-1	(1/79.429)

param	signification corresponding parameters in the equations	unit	value
β₁₂	production rate of FliA-pFlhDC with RBS E0032 β₁₂	nM.min^-1
(K₁₁/{coef_fliA})	activation constant of FliA-pFlhDC K₁₁	nM
n₁₁	complexation order of FliA-pFlhDC n₁₁	no dimension
β₂	production rate of OmpR-pFlhDC with RBS E0032 β₂	nM.min^-1
(K₁₉/{coef_ompR})	activation constant of OmpR-pFlhDC K₁₉	nM
n₁₉	complexation order of OmpR-pFlhDC n₁₉	no dimension

Then, if we have time, we want to verify the expected relation

@@ Line 1: / Line 1: @@
-[[Image:f3omp.jpg|thumb]] At the steady-state, we have
+[[Image:f3omp.jpg|thumb]]
-<center>[[Image:FliAeq.jpg]]</center>
-and
-<center>[[Image:OmpReq.jpg]]</center>
-so the expression
-<center>[[Image:f3expr.jpg]]</center>
-gives
-<center>[[Image:f3FliA.jpg]]</center>
-and
-<center>[[Image:f3OmpR.jpg]]</center>
-and for ''calculated values of the TF'',
-<center>[[Image:f3FliACalc.jpg]]</center>
-and
-<center>[[Image:f3OmpRCalc.jpg]]</center>
 <br><br>
@@ Line 99: / Line 81: @@
 Then, if we have time, we want to verify the expected relation
-<center>[[Image:SumFlhDC1.jpg]]</center>
+[[Image:SumFlhDC1.jpg|center]]