Team:Valencia/Project/Modeling

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Revision as of 16:08, 4 September 2008

Oxidative phosphorylation model coupled with thermogenine expression

Our project consist of implementing a controlled heating system inside Saccharomyces cerevisiae. In order to obtain this we are going to use a mitocondrial membrane protein known as thermogenin used by mamalians cells to increase its temperature.

The working principle of thermogenin is based on the respiratory electron transport chain. The way in which the thermogenin increases the temperature of the system can be described approximately as follows: It produces a hole on the mitocondrial membrane which makes difficult the production of a proton gradient in the membrane. The release of the mitocondrial proton gradient increases the temperature. (ficar referencia)

In order to describe the system three complementary models have been developed :

Black box model of the temperature increase by the thermogenin.
Detailed model of the respiratory electron transport chain.
Regulatory model of the thermogenin expresion.

Calculating the maximal attainable temperature

Since we need to control the system with the maximal accuracy we should know the theoretical limits of the heating production. Obviously, the minimal temperature value is the corresponding to the culture conditions. The maximal temperature can be determined by supposing that the proton motrive force is used solely in heat production mediated by thermogenine. The following calculations were made taking into account this assumption.

To calculate the energy produced per proton dissipated through the thermogenine we used the published rate ( Milakovik et al 2005) of ATP flow as an estimation of the Saccharomyces cerevisiae real value.

17.5 nmol/min = 2.92 • 10 ^-10 mol/s = 1.76 •10¹⁴ ATP particles/s

If ATP synthase needs four protons to produce one molecule of ATP, then we can easily calculate the proton flow through complex V.

7.03 •10¹⁴ p⁺/s

The free energy associated to a single proton being dissipated through the ATP synthase is 20 Kj/mol. Balancing the units we get the energy dissipated per proton:

3.32 •10²³ Kj/p⁺

The energy flow is calculated by multiplying both figures and adjusting the result to the proper units:

2.33 •10^-5 J/s

References

Milakovic T. and Johnson G. V. W.2005. Mitochondrial respiration and ATP production are significantly impaired in striatal cells expressing mutant huntingtin. The Journal of Biological Chemistry. 280:30773-30782.

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 ==Oxidative phosphorylation model coupled with thermogenine expression==
-Our project tries to implement a controlled heating system inside ''Saccharomyces cerevisiae''. The main variables to be taken into account are temperature production and ATP flow. We need to formulate an effective model for the oxidative  phosphorylation that couples the genetic expression of the thermogenine with the efficiency of the respiratory chain in ATP production. It will allow us to evaluate the effect produced by thermogenic activity on the energy flow.
+Our project consist of implementing a controlled heating system inside ''Saccharomyces cerevisiae''. In order to obtain this we are going to use a mitocondrial membrane protein known as thermogenin used by mamalians cells to increase its temperature.
-Notwithstanding the lack of a specific respiratory chain model in yeast, we are trying to develop our differential equations based on kinetic data collected from the literature. We will later compare our model with other sets of differential equations thought to describe the behavior of skeletal muscle mitochondria.
+The working principle of thermogenin is based on the respiratory electron transport chain. The way in which the thermogenin increases the temperature of the system can be described approximately as follows: It produces a hole on the mitocondrial membrane which makes difficult the production of a proton gradient in the membrane. The release of the mitocondrial proton gradient increases the temperature. (ficar referencia)
+In order to describe the system three complementary models have been developed :
+* Black box model of the temperature increase by the thermogenin.
+* Detailed model of the respiratory electron transport chain.
+* Regulatory model of the thermogenin expresion.
 ==Calculating the maximal attainable temperature==