Team:Warsaw/Calendar-Main/11 July 2008

From 2008.igem.org

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<p>'''Preparation of constructs with OmpA protein fusions'''<br>
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<h3>Preparation of constructs with OmpA protein fusions</h3>
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1. Colony PCR on colonies from plates with transformations OmpA_alpha. <br>
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<p><ol>
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2. Confirmed transformant colonies inoculated to liquid LB with kanamycin.<br>
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<li> Colony PCR on colonies from plates with transformations OmpA_alpha. </li>
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'''Cloning of protein Z DNA to OmpA constructs''' <br>
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<li> Confirmed transformant colonies inoculated to liquid LB with kanamycin.</li>
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1. 2 colonies was inoculated to liquid LB broth with kanamycin<br>
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</ol></p>
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'''Preparation of construct omega-A'''<br>
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<h3>Cloning of protein Z DNA to OmpA constructs</h3>
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<br>
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<p> 2 colonies was inoculated to liquid LB broth with kanamycin</p>
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1. PCR A in 50 µl<br>
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<h3>Preparation of construct omega-A</h3>
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<p><ol>
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<li> PCR A in 50 µl<br>
template DNA - pKS-A4 1 µl<br>
template DNA - pKS-A4 1 µl<br>
primer <html>
primer <html>
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<a href="https://2008.igem.org/Wiki/Team:Warsaw/primers#AP+NotI_N">AP+NotI_N</a></html> - 2 µl<br>
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<a href="https://2008.igem.org/Wiki/Team:Warsaw/primers#AP+NotI_N">AP+NotI_N</a> - 2 µl<br>
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primer<html>
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primer
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<a href="https://2008.igem.org/Wiki/Team:Warsaw/primers#AL+link10+homo2_N">AL+link10+homo2_N</a></html> - 2 µl<br>
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<a href="https://2008.igem.org/Wiki/Team:Warsaw/primers#AL+link10+homo2_N">AL+link10+homo2_N</a> - 2 µl<br>
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Pfu polymerase buffer + Mg2+ (from Fermentas) - 5 µl<br>
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Pfu polymerase buffer + Mg<sup>2+</sup> (from Fermentas) - 5 µl<br>
dNTPs - 1 µl <br>
dNTPs - 1 µl <br>
Pfu turbo - 0.5 µl<br>
Pfu turbo - 0.5 µl<br>
H2o - 38.5 µl<br>
H2o - 38.5 µl<br>
<br>
<br>
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program:<br>
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Program:<br>
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1. 95&deg;C 3'<br>
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<ol>
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2. 95&deg;C 30"<br>
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<li> 95&deg;C 3'</li>
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3.62&deg;C 45"<br>
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<li> 95&deg;C 30"</li>
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4.72&deg;C 45"<br>
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<li>62&deg;C 45"</li>
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5.72&deg;C 10'<br>
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<li>72&deg;C 45"</li>
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6. keeping in 4&deg;C<br>
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<li>72&deg;C 10'</li>
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<br>
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<li>keeping in 4&deg;C</li></ol>
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2. PCR omega in 50 µl<br>
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</li>
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<li> PCR omega in 50 µl<br>
template DNA - pUC19 1 µl<br>
template DNA - pUC19 1 µl<br>
primer OmegaLS - 2 µl<br>
primer OmegaLS - 2 µl<br>
primer AOmegaPli - 2 µl<br>
primer AOmegaPli - 2 µl<br>
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Pfu polymerase buffer + Mg2+ (from Fermentas) - 5 µl<br>
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Pfu polymerase buffer + Mg<sup>2+</sup> (from Fermentas) - 5 µl<br>
dNTPs - 1 µl <br>
dNTPs - 1 µl <br>
Pfu turbo - 0.5 µl<br>
Pfu turbo - 0.5 µl<br>
H2o - 38.5 µl<br>
H2o - 38.5 µl<br>
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<br>
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program:
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Program:<br>
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1. 95&deg;C 3'<br>
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<ol>
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2. 95&deg;C 30"<br>
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<li> 95&deg;C 3'</li>
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3. 62&deg;C 45"<br>
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<li> 95&deg;C 30"</li>
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4. 72&deg;C 45"<br>
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<li> 62&deg;C 45"</li>
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5. 72&deg;C 10'<br>
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<li> 72&deg;C 45"</li>
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6. keeping in 4&deg;C<br>
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<li> 72&deg;C 10'</li>
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<li> keeping in 4&deg;C</li></ol>
25 cycles
25 cycles
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<br>
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</li>
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3. gel electrophoresis<br>
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<li> Gel electrophoresis</li>
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<br>
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4.reisolation from agarose gel<br>
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<li>Reisolation from agarose gel</li>
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</ol>
</p>
</p>
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</html>
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Revision as of 17:49, 1 October 2008

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Preparation of constructs with OmpA protein fusions

  1. Colony PCR on colonies from plates with transformations OmpA_alpha.
  2. Confirmed transformant colonies inoculated to liquid LB with kanamycin.

Cloning of protein Z DNA to OmpA constructs

2 colonies was inoculated to liquid LB broth with kanamycin

Preparation of construct omega-A

  1. PCR A in 50 µl
    template DNA - pKS-A4 1 µl
    primer AP+NotI_N - 2 µl
    primer AL+link10+homo2_N - 2 µl
    Pfu polymerase buffer + Mg2+ (from Fermentas) - 5 µl
    dNTPs - 1 µl
    Pfu turbo - 0.5 µl
    H2o - 38.5 µl

    Program:
    1. 95°C 3'
    2. 95°C 30"
    3. 62°C 45"
    4. 72°C 45"
    5. 72°C 10'
    6. keeping in 4°C
  2. PCR omega in 50 µl
    template DNA - pUC19 1 µl
    primer OmegaLS - 2 µl
    primer AOmegaPli - 2 µl
    Pfu polymerase buffer + Mg2+ (from Fermentas) - 5 µl
    dNTPs - 1 µl
    Pfu turbo - 0.5 µl
    H2o - 38.5 µl
    Program:
    1. 95°C 3'
    2. 95°C 30"
    3. 62°C 45"
    4. 72°C 45"
    5. 72°C 10'
    6. keeping in 4°C
    25 cycles
  3. Gel electrophoresis
  4. Reisolation from agarose gel