Team:Warsaw/Calendar-Main/21 August 2008

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(Difference between revisions)
Line 9: Line 9:
<tr><th>OmpA variant ("hunter")</th><th>"Prey" variant</th><th>Growth with prey</th><th>Growth without prey</th></tr>
<tr><th>OmpA variant ("hunter")</th><th>"Prey" variant</th><th>Growth with prey</th><th>Growth without prey</th></tr>
<tr><th>OmpA-alpha</th><td>His+Z+omega</td><td>+</td><td>+</td></tr>
<tr><th>OmpA-alpha</th><td>His+Z+omega</td><td>+</td><td>+</td></tr>
-
<tr><th>OmpA-alpha</th><td>His+Z+alfa</td><td>+</td><td>+</td></tr>
+
<tr><th>OmpA-alpha</th><td>His+Z+alpha</td><td>+</td><td>+</td></tr>
<tr><th>OmpA-A-alpha</th><td>His+Z+omega</td><td>+</td><td>-</td></tr>
<tr><th>OmpA-A-alpha</th><td>His+Z+omega</td><td>+</td><td>-</td></tr>
<tr><th>Ompa-A-omega</th><td>His+Z+alpha</td><td>+</td><td>-</td></tr>
<tr><th>Ompa-A-omega</th><td>His+Z+alpha</td><td>+</td><td>-</td></tr>

Revision as of 17:56, 24 October 2008

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Tests for ampicillin resistance given by protein added to medium

Piotr

Results of growth from previous day

OmpA variant ("hunter")"Prey" variantGrowth with preyGrowth without prey
OmpA-alphaHis+Z+omega++
OmpA-alphaHis+Z+alpha++
OmpA-A-alphaHis+Z+omega+-
Ompa-A-omegaHis+Z+alpha+-
OmpA-omegaHis+Z+alpha+-
Ompa-Z-alphaHis+Z+omega+-
OmpA_Adelta_alphaHis+Z+omega+-
OmpA_Adelta_omegaHis+Z+alpha+-
OmpA_omega_AdeltaHis+Z+alpha+-
OmpA-omega-A-alphano++


  1. Isolation of plasmids from above cultures.
  2. Control digest of isolated plasmids with BamHI and SacI.
  3. Gel electrophoresis - all constructs apart from ompa_alfa were successfully recovered


Conclusions:

  1. Almost none of tested constructs give resistance to ampicillin without prey protein added to culture medium.
  2. Interaction between hunter and prey is not necessary to makes cells ampicillin resistant(Omp_alpha and Omp_omega growth with prey)
  3. OmpA-alpha may be contaminated with antibiotic-resistant bacteria, alpha do not need interaction of A and Z to bind to omega - maybe we must give bacteria less prey

  4. Cloning of protein A DNA to GeneArt plasmid

    Antoni

    1. Colony PCR on colonies from plates with transformations pGeneart+A.
      Primers used: AP+NotI and AL+SacI.
    2. Gel electrophoresis.
    3. Confirmed transformant colonies inoculated to liquid LB with ampicillin.
    4. Inoculation to liquid LB with ampicillin: pET15b+OmpA-alpha.

    Cloning of alpha to pACYC177+OmpA_A_omega and pACYC177+OmpA_Z_omega

    Michał K.

    1. Isolation of plasmids from cultures inoculated on previous day.
    2. Control digest of isolated plasmids with FastBamHI and FastAcc65I (Fast Digest buffer).
    3. Gel electrophoresis - no proper clones found.