Team:Montreal/Notebook

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{|style="font color="#ffffff"; background-color:#cd0000; cellpadding="3" cellspacing="5" border="2" bordercolor="#cd0000"border-spacing:6px; text-align:center" width="960px"
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!align="center"|[[Team:Montreal|Home]]
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!style="text-align:center; background-color:#cd0000; border-width:0px; padding:3px;"|[[Team:Montreal|<font color="#ffffff">Home</font>]]
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!align="center"|[[Team:Montreal/Team|The Team]]
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!style="text-align:center; background-color:#cd0000; border-width:0px; padding:3px;"|[[Team:Montreal/Team|<font color="#ffffff">The Team</font>]]
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!align="center"|[[Team:Montreal/Project|The Project]]
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!align="center"|[[Team:Montreal/Parts|Parts Submitted to the Registry]]
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!align="center"|[[Team:Montreal/Modeling|Modeling]]
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!style="text-align:center; background-color:#cd0000; border-width:0px; padding:3px;"|[[Team:Montreal/Notebook|<font color="#ffffff">Notebook</font>]]
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!align="center"|[[Team:Montreal/Notebook|Notebook]]
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!style="text-align:center; background-color:#cd0000; border-width:0px; padding:3px;"|[[Team:Montreal/Modeling|<font color="#ffffff">Modeling</font>]]
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!style="text-align:center; background-color:#cd0000; border-width:0px; padding:3px;"|[[Team:Montreal/Links|<font color="#ffffff">Links</font>]]
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!style="text-align:center; background-color:#cd0000; border-width:0px; padding:3px;"|[[Team:Montreal/Sponsors|<font color="#ffffff">Sponsors</font>]]
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==Lab Progress==
 
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'''May 21st, 2008''': - Resctriction enzyme digest was done on the J-brick with EcoRI. Gel was run on the J-brick after the restriction digest. No DNA was detected on the gel (the ladder was visible on the gel).
 
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'''May 22nd, 2008''': - Prepared TOP10 Competent cells for eventual transformation.
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==Lab Protocols==
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- Performed Mini-prep on Reporter+ Cells
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- Performed Digest and Gel on Reporter plasmid extract -- no DNA present, suggest follow-up maxi-prep
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'''May 23rd, 2008''': - Transformed Top10 cells with Puc19 to ensure that the competent cell procedure was successful. Growth was observed, therefore procedure was successful.
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{| align="right"
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|align="right" |[[Image:Central_dogma.jpg]]
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'''May 25th, 2008''': - Diluted Reporter cells 1/1000 with 5ul Kan/mL culture for 16h incubation at 5:30pm. To be used for Maxiprep at 9:30am-1:30pm.
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Key Elements of the Central Dogma of cloning
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'''May 28th, 2008''': - Ran gel on Elowitz reporter DNA cut with EcoR1; 2 bands - 0.7 kb and 2.0 kb, confirms identity of reporter DNA.
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1. [https://2008.igem.org/Team:Montreal/Restriction_digest Restriction Digest]
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- Seeded syn-I and J-40001 into amp/kan LB and kan LB.
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'''May 29th, 2008''': - Growth of J-brick in culture - No growth of I-brick on culture - Seeded J-brick for Midi-Prep in 40mL LB with ampicillin - Transformed TOP10 cells with both I brick and Reporter Plasmid
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2. [https://2008.igem.org/Team:Montreal/DNA_Agarose_Gel Making a DNA Agarose Gel]
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'''June 2nd, 2008''': - Growth of I-brick on culture - Midi-prep of both I and J brick followed by gel - Gel indicates no presence of DNA, will be confirmed by spectrophotometric assay
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3. [https://2008.igem.org/Team:Montreal/Gel_extraction Gel extraction]
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'''June 3rd, 2008''': - Seeding of 5mL cultures of both I and J brick - Identity of colonies on I brick plates is suspect, must ensure that eventual DNA gel confirms exact restriction digest
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4. [https://2008.igem.org/Team:Montreal/Confirmation_quantity DNA quantity assessment]
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'''June 4th, 2008''': - Midiprep was done on the I and the J-brick. Once the isopropanol was added, the J-brick midiprep looked clear (no DNA was eluted). DNA gel needs to be done to confirm presence of DNA in both cases.
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5. [https://2008.igem.org/Team:Montreal/Ligation Ligation]
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'''June 9th, 2008''': - Seeded J and I-brick re-seeded for Maxi-Prep - Gel failed to confirm presence of previously collected DNA samples of J and I-brick, will be repeated following Maxi-Prep.
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6. [https://2008.igem.org/Team:Montreal/Cell_transformation Cell Transformation]
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'''June 10th, 2008''': - Since no growth was observed in the I-brick culture, the I brick was re-seeded.
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7. [https://2008.igem.org/Team:Montreal/Seeding Seeding method]
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- The J-brick was diluted in 500-ml of LB broth(for a Maxiprep to be done the next day).
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'''June 11th, 2008''':
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8. [https://2008.igem.org/Team:Montreal/DNA_Extraction DNA Extraction: Mini-, Midi-, Maxiprep]
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- Maxiprep of the J-brick.
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-Restriction digest of J-brick
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==Lab Progress==
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-Dilution of I-brick in 500-ml of LB broth.
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<p><center>
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'''[[Team:Montreal/Notebook/May|May 2008]]''' | '''[[Team:Montreal/Notebook/June|June 2008]]''' | '''[[Team:Montreal/Notebook/July|July 2008]]''' | '''[[Team:Montreal/Notebook/August|August 2008]]''' | '''[[Team:Montreal/Notebook/September|September 2008]]''' | '''[[Team:Montreal/Notebook/October|October 2008]]''' | '''[[Team:Montreal/Notebook/November|November 2008]]'''</center><br>

Latest revision as of 17:22, 1 August 2008

Home The Team The Project Parts Notebook Modeling Links Sponsors


Lab Protocols

Central dogma.jpg

Key Elements of the Central Dogma of cloning

1. Restriction Digest

2. Making a DNA Agarose Gel

3. Gel extraction

4. DNA quantity assessment

5. Ligation

6. Cell Transformation

7. Seeding method

8. DNA Extraction: Mini-, Midi-, Maxiprep

Lab Progress

May 2008 | June 2008 | July 2008 | August 2008 | September 2008 | October 2008 | November 2008

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