Team:Paris/Modeling
From 2008.igem.org
(→Parameters summary) |
(→Parameters summary) |
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|- style="background: #dddddd;" | |- style="background: #dddddd;" | ||
| style="background: #D4E2EF;" |γ<sub>FP1</sub> | | style="background: #D4E2EF;" |γ<sub>FP1</sub> | ||
- | | g | + | | g[2 + 8 x (i-1)] |
| Degradation rate | | Degradation rate | ||
| 1 | | 1 | ||
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|- style="background: #dddddd;" | |- style="background: #dddddd;" | ||
| style="background: #D4E2EF;" |γ<sub>FP2</sub> | | style="background: #D4E2EF;" |γ<sub>FP2</sub> | ||
- | | g( | + | | g[3 + 8 x (i-1)] |
| Degradation rate | | Degradation rate | ||
| 1 | | 1 | ||
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|- style="background: #dddddd;" | |- style="background: #dddddd;" | ||
| style="background: #D4E2EF;" |β<sub>FP2</sub> | | style="background: #D4E2EF;" |β<sub>FP2</sub> | ||
- | | B( | + | | B(3,i) |
| FlhDC activation coefficient | | FlhDC activation coefficient | ||
| 150 | | 150 | ||
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|- style="background: #dddddd;" | |- style="background: #dddddd;" | ||
| style="background: #D4E2EF;" |β'<sub>FP2</sub> | | style="background: #D4E2EF;" |β'<sub>FP2</sub> | ||
+ | | b(3,i) | ||
| FliA activation coefficient | | FliA activation coefficient | ||
| 300 | | 300 | ||
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|- style="background: #dddddd;" | |- style="background: #dddddd;" | ||
| style="background: #D4E2EF;" |γ<sub>FP3</sub> | | style="background: #D4E2EF;" |γ<sub>FP3</sub> | ||
+ | | g[4 + 8 x (i-1)] | ||
| Degradation rate | | Degradation rate | ||
| 1 | | 1 | ||
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|- style="background: #dddddd;" | |- style="background: #dddddd;" | ||
| style="background: #D4E2EF;" |β<sub>FP3</sub> | | style="background: #D4E2EF;" |β<sub>FP3</sub> | ||
+ | | B(4,i) | ||
| FlhDC activation coefficient | | FlhDC activation coefficient | ||
| 100 | | 100 | ||
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|- style="background: #dddddd;" | |- style="background: #dddddd;" | ||
| style="background: #D4E2EF;" |β'<sub>FP3</sub> | | style="background: #D4E2EF;" |β'<sub>FP3</sub> | ||
+ | | b(4,i) | ||
| FliA activation coefficient | | FliA activation coefficient | ||
| 350 | | 350 | ||
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|- style="background: #dddddd;" | |- style="background: #dddddd;" | ||
| style="background: #D4E2EF;" |γ<sub>lasI</sub> | | style="background: #D4E2EF;" |γ<sub>lasI</sub> | ||
+ | | g[4 + 8 x (i-1)] | ||
| Degradation rate | | Degradation rate | ||
| 1 | | 1 | ||
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|- style="background: #dddddd;" | |- style="background: #dddddd;" | ||
| style="background: #D4E2EF;" |β<sub>lasI</sub> | | style="background: #D4E2EF;" |β<sub>lasI</sub> | ||
+ | | B(4,i) | ||
| FlhDC activation coefficient | | FlhDC activation coefficient | ||
| 100 | | 100 | ||
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|- style="background: #dddddd;" | |- style="background: #dddddd;" | ||
| style="background: #D4E2EF;" |β'<sub>lasI</sub> | | style="background: #D4E2EF;" |β'<sub>lasI</sub> | ||
+ | | b(4,i) | ||
| FliA activation coefficient | | FliA activation coefficient | ||
| 350 | | 350 | ||
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|- style="background: #dddddd;" | |- style="background: #dddddd;" | ||
| style="background: #D4E2EF;" |γ<sub>HSL<sub>int</sub></sub> <br> <br> | | style="background: #D4E2EF;" |γ<sub>HSL<sub>int</sub></sub> <br> <br> | ||
+ | | g[5 + 8 x (i-1)] | ||
| Degradation rate | | Degradation rate | ||
| 1 | | 1 | ||
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|- style="background: #dddddd;" | |- style="background: #dddddd;" | ||
| style="background: #D4E2EF;" |β<sub>HSL<sub>int</sub></sub> <br> <br> | | style="background: #D4E2EF;" |β<sub>HSL<sub>int</sub></sub> <br> <br> | ||
+ | | B(5,i) | ||
| Production rate | | Production rate | ||
| 0,01 | | 0,01 | ||
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|- style="background: #dddddd;" | |- style="background: #dddddd;" | ||
| style="background: #D4E2EF;" |γ<sub>HSL<sub>ext</sub></sub> <br> <br> | | style="background: #D4E2EF;" |γ<sub>HSL<sub>ext</sub></sub> <br> <br> | ||
+ | | g[6 + 8 x (i-1)] | ||
| Degradation rate | | Degradation rate | ||
| 1 | | 1 | ||
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|- style="background: #dddddd;" | |- style="background: #dddddd;" | ||
| style="background: #D4E2EF;" |δ<sub>ext</sub> | | style="background: #D4E2EF;" |δ<sub>ext</sub> | ||
+ | | D(1,i) | ||
| Diffusion rate out off the cell | | Diffusion rate out off the cell | ||
| 2 | | 2 | ||
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|- style="background: #dddddd;" | |- style="background: #dddddd;" | ||
| style="background: #D4E2EF;" |γ<sub>tetR mRNA</sub> | | style="background: #D4E2EF;" |γ<sub>tetR mRNA</sub> | ||
+ | | D(2,i) | ||
| Degradation rate | | Degradation rate | ||
| 1 | | 1 | ||
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|- style="background: #dddddd;" | |- style="background: #dddddd;" | ||
| style="background: #D4E2EF;" |ρ | | style="background: #D4E2EF;" |ρ | ||
+ | | R(i) | ||
| Maximal contribution to tetR in the presence of saturating amounts of HSL | | Maximal contribution to tetR in the presence of saturating amounts of HSL | ||
| 20 | | 20 | ||
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|- style="background: #dddddd;" | |- style="background: #dddddd;" | ||
| style="background: #D4E2EF;" |θ | | style="background: #D4E2EF;" |θ | ||
+ | | 0(i) | ||
| Ratio between mRNA and protein lifetimes | | Ratio between mRNA and protein lifetimes | ||
| 1 | | 1 | ||
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|- style="background: #dddddd;" | |- style="background: #dddddd;" | ||
| style="background: #D4E2EF;" |γ<sub>flhDC</sub> | | style="background: #D4E2EF;" |γ<sub>flhDC</sub> | ||
+ | | g[8 + 8 x (i-1)] | ||
| Degradation rate | | Degradation rate | ||
| 1 | | 1 | ||
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|- style="background: #dddddd;" | |- style="background: #dddddd;" | ||
| style="background: #D4E2EF;" |τ | | style="background: #D4E2EF;" |τ | ||
+ | | T(i) | ||
| Threshold for tetR repression | | Threshold for tetR repression | ||
| (20000) | | (20000) | ||
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|- style="background: #dddddd;" | |- style="background: #dddddd;" | ||
| style="background: #D4E2EF;" |∆ | | style="background: #D4E2EF;" |∆ | ||
+ | | Pa(i) | ||
| Promoter activity without the repressor | | Promoter activity without the repressor | ||
|(100) | |(100) |
Revision as of 18:24, 7 August 2008
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