Team:Paris/Network analysis and design/Core system/mathematical analysis and simulations

From 2008.igem.org

(Difference between revisions)
(Parameters' changes)
Line 23: Line 23:
| style="background: #D4E2EF;"|Core system
| style="background: #D4E2EF;"|Core system
| style=" text-align:center;" |[[Image:Core_system_mini.png|center]]
| style=" text-align:center;" |[[Image:Core_system_mini.png|center]]
-
| [[Image:orgsad.gif‎]]
+
| style=" text-align:center;" |[[Image:orgsad.gif‎]]
| Non oscillating system
| Non oscillating system
|- style="background: #dddddd;"
|- style="background: #dddddd;"
| style="background: #D4E2EF;" |Removing the activation of envZ via FlhDC
| style="background: #D4E2EF;" |Removing the activation of envZ via FlhDC
| style=" text-align:center;" |[[Image:Core_system_delta_flhDC_envZ.png‎‎]]
| style=" text-align:center;" |[[Image:Core_system_delta_flhDC_envZ.png‎‎]]
-
| [[Image:Orgstar.gif]]
+
| style=" text-align:center;" |[[Image:Orgstar.gif]]
| Modest damped oscillations
| Modest damped oscillations
|- style="background: #dddddd;"
|- style="background: #dddddd;"
| style="background: #D4E2EF;" |Removing the auto-activation of flia
| style="background: #D4E2EF;" |Removing the auto-activation of flia
| style=" text-align:center;" | [[Image:Core_system_delta_flia_flia.png‎‎]]
| style=" text-align:center;" | [[Image:Core_system_delta_flia_flia.png‎‎]]
-
| [[Image:Orgstar.gif]][[Image:Orgstar.gif]]
+
|style=" text-align:center;" | [[Image:Orgstar.gif]][[Image:Orgstar.gif]]
| Damped oscillations
| Damped oscillations
|- style="background: #dddddd;"
|- style="background: #dddddd;"
| style="background: #D4E2EF;" |Removing both: the activation of envZ via FlhDC and the auto-activation of flia
| style="background: #D4E2EF;" |Removing both: the activation of envZ via FlhDC and the auto-activation of flia
| style=" text-align:center;" | [[Image:Core_system_delta_flhDC_envZ_delta_flia_flia.png‎‎‎‎]]
| style=" text-align:center;" | [[Image:Core_system_delta_flhDC_envZ_delta_flia_flia.png‎‎‎‎]]
-
| [[Image:Orgstar.gif]][[Image:Orgstar.gif]]
+
| style=" text-align:center;" |[[Image:Orgstar.gif]][[Image:Orgstar.gif]]
| Damped oscillations with greater amplitud
| Damped oscillations with greater amplitud
|- style="background: #dddddd;"
|- style="background: #dddddd;"
-
| style="background: #D4E2EF;" | Enhancing the inhibition of FlhDC via envZ; Removing both: the activation of envZ via FlhDC and the auto-activation of flia
+
|style=" text-align:center;" | style="background: #D4E2EF;" | Enhancing the inhibition of FlhDC via envZ; Removing both: the activation of envZ via FlhDC and the auto-activation of flia
| style=" text-align:center;"  | [[Image:Core_system_envZ_plus.png‎‎‎‎]]
| style=" text-align:center;"  | [[Image:Core_system_envZ_plus.png‎‎‎‎]]
| [[Image:Orgstar.gif]][[Image:Orgstar.gif]][[Image:Orgstar.gif]]
| [[Image:Orgstar.gif]][[Image:Orgstar.gif]][[Image:Orgstar.gif]]

Revision as of 04:23, 26 October 2008

Mathematical Analysis and Simulations



FIFO Analysis

understanding flia role

Oscillation Analysis

Jacobian analysis

Parameters' changes

analysis of core system (biocham)

Description System Evaluation Observations
Core system
Core system mini.png
Orgsad.gif Non oscillating system
Removing the activation of envZ via FlhDC Core system delta flhDC envZ.png Orgstar.gif Modest damped oscillations
Removing the auto-activation of flia Core system delta flia flia.png Orgstar.gifOrgstar.gif Damped oscillations
Removing both: the activation of envZ via FlhDC and the auto-activation of flia Core system delta flhDC envZ delta flia flia.png Orgstar.gifOrgstar.gif Damped oscillations with greater amplitud
style="background: #D4E2EF;" | Enhancing the inhibition of FlhDC via envZ; Removing both: the activation of envZ via FlhDC and the auto-activation of flia Core system envZ plus.png Orgstar.gifOrgstar.gifOrgstar.gif Conserved oscillations
Synchronized oscillations should be searched taking the last system as a starting point.