"
Team:UC Berkeley Tools/Notebook/Doug's Notebook
From 2008.igem.org
(→Week of June 15th, 2008) |
(→Week of June 15th, 2008) |
||
| Line 30: | Line 30: | ||
*Unique design entry and views | *Unique design entry and views | ||
| - | The optimal assembly algorithms were discussed and Anne will be implementing the infrastructure to support them this week. | + | The optimal assembly algorithms were discussed and Anne will be implementing the infrastructure to support them this week. Chris Batten and Will will be working with her to get |
Here are some screenshots of interest. They display the sequence view in Clotho as well as the ability of the tool to connection to and query mySQL based databases for parts. | Here are some screenshots of interest. They display the sequence view in Clotho as well as the ability of the tool to connection to and query mySQL based databases for parts. | ||
| - | [[Image:ClothoSequenceView.png|180 px|center | + | [[Image:ClothoSequenceView.png|180 px|center|First pass at Clotho's sequence view]] |
The sequence view slows the sequence for the current design. It is based on ApE's interface currently. | The sequence view slows the sequence for the current design. It is based on ApE's interface currently. | ||
Revision as of 02:23, 18 June 2008
| Home | The Team | The Project | Notebook |
|---|
June 2nd, 2008
We had our first meeting today. The basic software of Clotho was explained and the tasks that each student had to perform were outlined. The expectations were described and the computing environment requirements were also explained.
Week of June 8th, 2008
This week several key logistic issues were resolved:
- Key card access for all students was enabled for the DOP Center
- Each student received physical keys for Stanley hall
- A computer account, computer, port activation, and ID card were all obtained for Anne
In addition we have started a bug tracking spreadsheet for Clotho as well as a feature list spreadsheet. Anne joined the team this week.
Week of June 15th, 2008
We met with Prof. Anderson to demo Clotho and begin to talk about advanced features for the project.
We have decided that Clotho will be composed of the following four areas:
- Connectivity
- Algorithms/Tools
- "Lim" support
- Unique design entry and views
The optimal assembly algorithms were discussed and Anne will be implementing the infrastructure to support them this week. Chris Batten and Will will be working with her to get
Here are some screenshots of interest. They display the sequence view in Clotho as well as the ability of the tool to connection to and query mySQL based databases for parts.
The sequence view slows the sequence for the current design. It is based on ApE's interface currently.
These windows show how mySQL database connections can be specified. This stores multiple connections with one currently active connection. The user can select from any previously created connection to be active. Upon connection, the available fields are shown. The user then can select the primary field used for organization.
In the navigator, the parts for the various connections are shown. If a part is double clicked, the part information comes up. These connections can be searched, as well as have parts added, removed, or modified.
