Team:Paris/Network analysis and design/Core system/mathematical analysis and simulations
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{{Paris/Menu}} | {{Paris/Menu}} | ||
{{Paris/Header|Mathematical Analysis and Simulations}} | {{Paris/Header|Mathematical Analysis and Simulations}} | ||
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+ | |||
+ | == FIFO Analysis == | ||
+ | understanding flia role | ||
+ | |||
+ | <html> | ||
+ | <input type="button" name="lien1" value="c'est un test !" onclick="self.location.href='https://2008.igem.org/wiki/index.php?title=Team:Paris/Network_analysis_and_design/Core_system/mathematical_analysis_and_simulations'" style="background-color:#3cb371" style="color:white; font-weight:bold"onclick> | ||
+ | |||
+ | </html> | ||
+ | |||
+ | <html> | ||
+ | |||
+ | <input type="image" | ||
+ | src="Core1.jpg" | ||
+ | name="Core1" alt="..." | ||
+ | onclick="self.location.href='https://2008.igem.org/wiki/index.php?title=Team:Paris/Network_analysis_and_design/Core_system/mathematical_analysis_and_simulations'"> | ||
+ | </html> | ||
+ | |||
+ | == Oscillation Analysis == | ||
+ | {{Paris/Toggle|Jacobian Analysis|Team:Paris/Lipsum}} | ||
== Parameters' changes == | == Parameters' changes == | ||
- | analysis of core system | + | analysis of core system (biocham) |
<center> | <center> | ||
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| System | | System | ||
| Evaluation | | Evaluation | ||
- | | | + | | Observations |
|- style="background: #dddddd;" | |- style="background: #dddddd;" | ||
| style="background: #D4E2EF;"|Core system | | style="background: #D4E2EF;"|Core system | ||
| style=" text-align:center;" |[[Image:Core_system_mini.png|center]] | | style=" text-align:center;" |[[Image:Core_system_mini.png|center]] | ||
- | | [[Image:orgsad.gif]] | + | | style=" text-align:center;" |[[Image:orgsad.gif]] |
- | | | + | | Non oscillating system |
|- style="background: #dddddd;" | |- style="background: #dddddd;" | ||
| style="background: #D4E2EF;" |Removing the activation of envZ via FlhDC | | style="background: #D4E2EF;" |Removing the activation of envZ via FlhDC | ||
- | | style=" text-align:center;" |[[Image: | + | | style=" text-align:center;" |[[Image:Core_system_delta_flhDC_envZ_dotted_mini.png]] |
- | | [[Image:Orgstar.gif]] | + | | style=" text-align:center;" |[[Image:Orgstar.gif]] |
- | | | + | | Modest damped oscillations |
|- style="background: #dddddd;" | |- style="background: #dddddd;" | ||
| style="background: #D4E2EF;" |Removing the auto-activation of flia | | style="background: #D4E2EF;" |Removing the auto-activation of flia | ||
| style=" text-align:center;" | [[Image:Core_system_delta_flia_flia.png]] | | style=" text-align:center;" | [[Image:Core_system_delta_flia_flia.png]] | ||
- | | [[Image:Orgstar.gif]][[Image:Orgstar.gif]] | + | |style=" text-align:center;" | [[Image:Orgstar.gif]][[Image:Orgstar.gif]] |
- | | | + | | Damped oscillations |
|- style="background: #dddddd;" | |- style="background: #dddddd;" | ||
| style="background: #D4E2EF;" |Removing both: the activation of envZ via FlhDC and the auto-activation of flia | | style="background: #D4E2EF;" |Removing both: the activation of envZ via FlhDC and the auto-activation of flia | ||
| style=" text-align:center;" | [[Image:Core_system_delta_flhDC_envZ_delta_flia_flia.png]] | | style=" text-align:center;" | [[Image:Core_system_delta_flhDC_envZ_delta_flia_flia.png]] | ||
- | | [[Image:Orgstar.gif]][[Image:Orgstar.gif]] | + | | style=" text-align:center;" |[[Image:Orgstar.gif]][[Image:Orgstar.gif]] |
- | | | + | | Damped oscillations with greater amplitud |
|- style="background: #dddddd;" | |- style="background: #dddddd;" | ||
| style="background: #D4E2EF;" | Enhancing the inhibition of FlhDC via envZ; Removing both: the activation of envZ via FlhDC and the auto-activation of flia | | style="background: #D4E2EF;" | Enhancing the inhibition of FlhDC via envZ; Removing both: the activation of envZ via FlhDC and the auto-activation of flia | ||
| style=" text-align:center;" | [[Image:Core_system_envZ_plus.png]] | | style=" text-align:center;" | [[Image:Core_system_envZ_plus.png]] | ||
- | | [[Image:Orgstar.gif]][[Image:Orgstar.gif]][[Image:Orgstar.gif]] | + | |style=" text-align:center;" | [[Image:Orgstar.gif]][[Image:Orgstar.gif]][[Image:Orgstar.gif]] |
- | | | + | | Conserved oscillations |
|- style="background: #dddddd;" | |- style="background: #dddddd;" | ||
- | !colspan="4" | Synchronized oscillations should be | + | !colspan="4" | Synchronized oscillations should be searched taking the last system as a starting point. |
|}</center> | |}</center> |
Latest revision as of 17:12, 28 October 2008