Team:Warsaw/Calendar-Main/5 August 2008
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- | + | <h3>Cloning of truncated fragment of protein A (ΔA)</h3> | |
- | </p> | + | <h4>Emilia</h4> |
+ | <ol><li><a href="https://2008.igem.org/wiki/index.php?title=Wiki/Team:Warsaw/protocols#plasmid_DNA_isolation">Isolation</a> of plasmids from cultures inoculated on previous day.</li> | ||
+ | <li> Control <a href="https://2008.igem.org/wiki/index.php?title=Wiki/Team:Warsaw/protocols#digest">digest</a> with SacI and BamHI (BamHI buffer).</li> | ||
+ | <li> Gel electrophoresis - proper clones found for both products of ligation.</li></ol> | ||
+ | |||
+ | |||
+ | <h3>Checking if <a href=https://2008.igem.org/Wiki/Team:Warsaw/vectors/pACYC177%2BompA-omega-A-alpha>OmpA_omega_ΔA_alpha</a> gives ampicillin resistance</h3> | ||
+ | <h4>Piotr, Weronika</h4> | ||
+ | |||
+ | <p>Inoculation <a href=https://2008.igem.org/Wiki/Team:Warsaw/vectors/pACYC177%2BompA-omega-A-alpha>OmpA_omega_ΔA_alpha</a> from various IPTG concentrations (in mmol/mL) (0, 0.1, 0.25, 0.5, 0.75, 1) into same IPTG concentrations, but with various ampicillin concentrations (in mmol/mL)(25, 50, 75, 100) in ratio: 1:50.</p> | ||
+ | |||
+ | <center><h4 style="text-align: center">Measurement of bacterial culture growth (OD) in the evening:</h4> </center> | ||
+ | |||
+ | |||
+ | <table id="result" align="center"> | ||
+ | <tr><th rowspan="2">ampicillin concentration (μg/mL):</th><th colspan="6">IPTG concentration (mmol/mL):</td></tr> | ||
+ | <tr><th>0</th><th>0.1</th><th>0.25</th><th>0.5</th><th>0.75</th><th>1</th></tr> | ||
+ | <tr><th>25</th><td class="live">1.558</td><td class="live">1.469</td><td class="live">1.587</td><td class="live">1.49</td><td class="live">1.566</td><td class="live">1.311</td></tr> | ||
+ | <tr><th>50</th><td class="live">1.425</td><td class="live">1.435</td><td class="live">1.524</td><td class="live">1.055</td><td class="live">0.920</td><td class="live">0.935</td></tr> | ||
+ | <tr><th>75</th><td class="live">1.09</td><td class="live">0.989</td><td class="live">1.447</td><td class="live">0.971</td><td class="live">0.951</td><td class="live">0.992</td></tr> | ||
+ | <tr><th>100</th><td class="live">0.09</td><td class="live">0.685</td><td class="live">1.378</td><td class="live">1.078</td><td class="live">0.977</td><td class="live">0.992</td></tr> | ||
+ | |||
+ | </table> | ||
+ | <p> | ||
+ | Inoculation of <a href=https://2008.igem.org/Wiki/Team:Warsaw/vectors/pACYC177%2BompA-omega-A-alpha>OmpA_omega_ΔA_alpha</a> into various IPTG concentrations: 0, 0.1, 0.25, 0.5, 0.75 mmol/mL (repetition is necessary)</p> | ||
+ | |||
+ | <h3>Checking <a href=https://2008.igem.org/Wiki/Team:Warsaw/vectors/pACYC177%2BompA-omega-A-alpha>OmpA_omega_ΔA_alpha</a> expression</h3> | ||
+ | <h4>Piotr, Weronika</h4> | ||
+ | |||
+ | |||
+ | <ol> | ||
+ | <li>Spinning.</li> | ||
+ | <li>Suspending.</li> | ||
+ | <li>Adding of lysis buffer.</li> | ||
+ | <li>Boiling.</li> | ||
+ | <li>Putting into poliacrylamide gel.</li> | ||
+ | <li>Transfer onto nitrocellulose.</li> | ||
+ | <li>Blocking.</li> | ||
+ | <li>Anti-A antibody binding.</li> | ||
+ | <li>Washing.</li> | ||
+ | <li>Anti-rabbit antibody binding.</li> | ||
+ | <li>Developing with BCIP and NBT (<a href="https://2008.igem.org/Team:Warsaw/Calendar-Main/5_August_2008#fig1">Fig. 1.</a>). </li> | ||
+ | </ol> | ||
+ | |||
+ | <a name="fig1"><img src="https://static.igem.org/mediawiki/2008/e/ea/Western1_WAW.jpg" width=400/></a> | ||
+ | <var><b>Fig. 1.Protein A detection in bacterial lysates.</b><br> | ||
+ | 1 - protein marker,<br> | ||
+ | 2 and 3 - <i>E coli</i> without plasmid,<br> | ||
+ | 4 - <b>Omp_omega_deltaA_alpha</b> + 0,5 mM IPTG,<br> | ||
+ | 5 - <i>E coli</i> without plasmid,<br> | ||
+ | 6 - <b>Omp_omega_deltaA_alpha</b> + 1 mM IPTG,<br> | ||
+ | 7 - Omp_omega_A_deltaalpha without inducer.</var> | ||
+ | |||
+ | <br><br> | ||
+ | <h3>Preparing <a href=https://2008.igem.org/Wiki/Team:Warsaw/vectors/pACYC177%2BompA-omega-deltaA>pACYC177+OmpA_omega_ΔA</a> construct</h3><h4>Michał K.</h4> | ||
+ | <ol><li><a href="https://2008.igem.org/wiki/index.php?title=Wiki/Team:Warsaw/protocols#electrotransform">Transformation</a> of E. coli <a href="https://2008.igem.org/Wiki/Team:Warsaw/igem_notebook.htm#top10">TOP10</a> strain with ligation. </li> | ||
+ | <li>Transformants plating on LB + kanamycin. </li></ol> | ||
</html> | </html> |
Latest revision as of 09:01, 29 October 2008
Cloning of truncated fragment of protein A (ΔA)Emilia
Checking if OmpA_omega_ΔA_alpha gives ampicillin resistancePiotr, WeronikaInoculation OmpA_omega_ΔA_alpha from various IPTG concentrations (in mmol/mL) (0, 0.1, 0.25, 0.5, 0.75, 1) into same IPTG concentrations, but with various ampicillin concentrations (in mmol/mL)(25, 50, 75, 100) in ratio: 1:50. Measurement of bacterial culture growth (OD) in the evening:
Inoculation of OmpA_omega_ΔA_alpha into various IPTG concentrations: 0, 0.1, 0.25, 0.5, 0.75 mmol/mL (repetition is necessary) Checking OmpA_omega_ΔA_alpha expressionPiotr, Weronika
1 - protein marker, 2 and 3 - E coli without plasmid, 4 - Omp_omega_deltaA_alpha + 0,5 mM IPTG, 5 - E coli without plasmid, 6 - Omp_omega_deltaA_alpha + 1 mM IPTG, 7 - Omp_omega_A_deltaalpha without inducer. Preparing pACYC177+OmpA_omega_ΔA constructMichał K.
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