Team:Warsaw/Calendar-Main/5 August 2008

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<ol><li> <a href="https://2008.igem.org/wiki/index.php?title=Wiki/Team:Warsaw/protocols#plasmid_DNA_isolation">Isolation of plasmids</a> from cultures inocluated on previous day. </li>
 
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<li> Control <a href="https://2008.igem.org/wiki/index.php?title=Wiki/Team:Warsaw/protocols#digest">digest</a> of isolated plasmids with BamHI and SacI. </li></ol>
 
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</p>
 
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<h3>Cloning of truncated fragment of protein A (&Delta;A)</h3>
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<h4>Emilia</h4>
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<ol><li><a href="https://2008.igem.org/wiki/index.php?title=Wiki/Team:Warsaw/protocols#plasmid_DNA_isolation">Isolation</a> of plasmids from cultures inoculated on previous day.</li>
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<li> Control <a href="https://2008.igem.org/wiki/index.php?title=Wiki/Team:Warsaw/protocols#digest">digest</a> with SacI and BamHI (BamHI buffer).</li>
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<li> Gel electrophoresis - proper clones found for both products of ligation.</li></ol>
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Sprawdzenie czy ekspresja A jest na powieżchni
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<h3>Checking if <a href=https://2008.igem.org/Wiki/Team:Warsaw/vectors/pACYC177%2BompA-omega-A-alpha>OmpA_omega_&Delta;A_alpha</a> gives ampicillin resistance</h3>
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Piotr
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<h4>Piotr, Weronika</h4>
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Nakroplenie bakterii na nittrocelulozę, wysuszenie, blokowanie, przeciwciała anty-A, płukanie, przeciwciała anty-królik, wywołanie BCIP i NBT
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<p>Inoculation <a href=https://2008.igem.org/Wiki/Team:Warsaw/vectors/pACYC177%2BompA-omega-A-alpha>OmpA_omega_&Delta;A_alpha</a> from various IPTG concentrations (in mmol/mL) (0, 0.1, 0.25, 0.5, 0.75, 1) into same IPTG concentrations, but with various ampicillin concentrations (in mmol/mL)(25, 50, 75, 100) in ratio: 1:50.</p>
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<center><h4 style="text-align: center">Measurement of bacterial culture growth (OD) in the evening:</h4> </center>
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<table id="result" align="center">
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<tr><th rowspan="2">ampicillin concentration (μg/mL):</th><th colspan="6">IPTG concentration (mmol/mL):</td></tr>
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<tr><th>0</th><th>0.1</th><th>0.25</th><th>0.5</th><th>0.75</th><th>1</th></tr>
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<tr><th>25</th><td class="live">1.558</td><td class="live">1.469</td><td class="live">1.587</td><td class="live">1.49</td><td class="live">1.566</td><td class="live">1.311</td></tr>
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<tr><th>50</th><td class="live">1.425</td><td class="live">1.435</td><td class="live">1.524</td><td class="live">1.055</td><td class="live">0.920</td><td class="live">0.935</td></tr>
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<tr><th>75</th><td class="live">1.09</td><td class="live">0.989</td><td class="live">1.447</td><td class="live">0.971</td><td class="live">0.951</td><td class="live">0.992</td></tr>
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<tr><th>100</th><td class="live">0.09</td><td class="live">0.685</td><td class="live">1.378</td><td class="live">1.078</td><td class="live">0.977</td><td class="live">0.992</td></tr>
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</table>
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<p>
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Inoculation of <a href=https://2008.igem.org/Wiki/Team:Warsaw/vectors/pACYC177%2BompA-omega-A-alpha>OmpA_omega_&Delta;A_alpha</a> into various IPTG concentrations: 0, 0.1, 0.25, 0.5, 0.75 mmol/mL (repetition is necessary)</p>
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<h3>Checking <a href=https://2008.igem.org/Wiki/Team:Warsaw/vectors/pACYC177%2BompA-omega-A-alpha>OmpA_omega_&Delta;A_alpha</a> expression</h3>
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<h4>Piotr, Weronika</h4>
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zdjęcie żelu
 
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<ol>
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<li>Spinning.</li>
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<li>Suspending.</li>
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<li>Adding of lysis buffer.</li>
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<li>Boiling.</li>
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<li>Putting into poliacrylamide gel.</li>
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<li>Transfer onto nitrocellulose.</li>
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<li>Blocking.</li>
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<li>Anti-A antibody binding.</li>
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<li>Washing.</li>
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<li>Anti-rabbit antibody binding.</li>
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<li>Developing with BCIP and NBT (<a href="https://2008.igem.org/Team:Warsaw/Calendar-Main/5_August_2008#fig1">Fig. 1.</a>). </li>
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</ol>
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<a name="fig1"><img src="https://static.igem.org/mediawiki/2008/e/ea/Western1_WAW.jpg" width=400/></a>
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<var><b>Fig. 1.Protein A detection in bacterial lysates.</b><br>
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1 - protein marker,<br>
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2 and 3 - <i>E coli</i> without plasmid,<br>
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4 - <b>Omp_omega_deltaA_alpha</b> + 0,5 mM IPTG,<br>
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5 - <i>E coli</i> without plasmid,<br>
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6 - <b>Omp_omega_deltaA_alpha</b> + 1 mM IPTG,<br>
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7 - Omp_omega_A_deltaalpha without inducer.</var>
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<br><br>
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<h3>Preparing <a href=https://2008.igem.org/Wiki/Team:Warsaw/vectors/pACYC177%2BompA-omega-deltaA>pACYC177+OmpA_omega_&Delta;A</a> construct</h3><h4>Michał K.</h4>
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<ol><li><a href="https://2008.igem.org/wiki/index.php?title=Wiki/Team:Warsaw/protocols#electrotransform">Transformation</a> of E. coli <a href="https://2008.igem.org/Wiki/Team:Warsaw/igem_notebook.htm#top10">TOP10</a> strain with ligation. </li>
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<li>Transformants plating on LB + kanamycin. </li></ol>
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Latest revision as of 09:01, 29 October 2008

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Cloning of truncated fragment of protein A (ΔA)

Emilia

  1. Isolation of plasmids from cultures inoculated on previous day.
  2. Control digest with SacI and BamHI (BamHI buffer).
  3. Gel electrophoresis - proper clones found for both products of ligation.

Checking if OmpA_omega_ΔA_alpha gives ampicillin resistance

Piotr, Weronika

Inoculation OmpA_omega_ΔA_alpha from various IPTG concentrations (in mmol/mL) (0, 0.1, 0.25, 0.5, 0.75, 1) into same IPTG concentrations, but with various ampicillin concentrations (in mmol/mL)(25, 50, 75, 100) in ratio: 1:50.

Measurement of bacterial culture growth (OD) in the evening:

ampicillin concentration (μg/mL):IPTG concentration (mmol/mL):
00.10.250.50.751
251.5581.4691.5871.491.5661.311
501.4251.4351.5241.0550.9200.935
751.090.9891.4470.9710.9510.992
1000.090.6851.3781.0780.9770.992

Inoculation of OmpA_omega_ΔA_alpha into various IPTG concentrations: 0, 0.1, 0.25, 0.5, 0.75 mmol/mL (repetition is necessary)

Checking OmpA_omega_ΔA_alpha expression

Piotr, Weronika

  1. Spinning.
  2. Suspending.
  3. Adding of lysis buffer.
  4. Boiling.
  5. Putting into poliacrylamide gel.
  6. Transfer onto nitrocellulose.
  7. Blocking.
  8. Anti-A antibody binding.
  9. Washing.
  10. Anti-rabbit antibody binding.
  11. Developing with BCIP and NBT (Fig. 1.).
Fig. 1.Protein A detection in bacterial lysates.
1 - protein marker,
2 and 3 - E coli without plasmid,
4 - Omp_omega_deltaA_alpha + 0,5 mM IPTG,
5 - E coli without plasmid,
6 - Omp_omega_deltaA_alpha + 1 mM IPTG,
7 - Omp_omega_A_deltaalpha without inducer.


Preparing pACYC177+OmpA_omega_ΔA construct

Michał K.

  1. Transformation of E. coli TOP10 strain with ligation.
  2. Transformants plating on LB + kanamycin.