Template:Team:UC Berkeley/Notebook/MJV sequencing

From 2008.igem.org

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| MJV063 || 7-19-08 || mv16 || Clone #3 || ca998 || wrong part (a~pelB.rbs_ligase! instead of rbs_pelB.ligase!) || [[Team:UC Berkeley/Notebook/MJV/MJV063 | MJV063]]
| MJV063 || 7-19-08 || mv16 || Clone #3 || ca998 || wrong part (a~pelB.rbs_ligase! instead of rbs_pelB.ligase!) || [[Team:UC Berkeley/Notebook/MJV/MJV063 | MJV063]]
|-
|-
-
| MJV064 || 7-22-08 || mv1|| Clone #1 || ca998 || Result || [[Team:UC Berkeley/Notebook/MJV/MJV064 | MJV064]]
+
| MJV064 || 7-22-08 || mv1|| Clone #1 || ca998 || wrong part (doesn't even look like it's in BBb) || [[Team:UC Berkeley/Notebook/MJV/MJV064 | MJV064]]
|-
|-
| MJV065 || 7-22-08 || mv10 || Clone #1 || ca998 || Perfect || [[Team:UC Berkeley/Notebook/MJV/MJV065 | MJV065]]
| MJV065 || 7-22-08 || mv10 || Clone #1 || ca998 || Perfect || [[Team:UC Berkeley/Notebook/MJV/MJV065 | MJV065]]
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| MJV068 || 7-22-08 || mv11 || Clone #8 || ca998 || Perfect partial || [[Team:UC Berkeley/Notebook/MJV/MJV068 | MJV068]]
| MJV068 || 7-22-08 || mv11 || Clone #8 || ca998 || Perfect partial || [[Team:UC Berkeley/Notebook/MJV/MJV068 | MJV068]]
|-
|-
-
| MJV069 || 7-22-08 || ig161 || Clone #2 || ca998 || Result || [[Team:UC Berkeley/Notebook/MJV/MJV069 | MJV069]]
+
| MJV069 || 7-22-08 || ig161 || Clone #2 || ca998 || Perfect || [[Team:UC Berkeley/Notebook/MJV/MJV069 | MJV069]]
|-
|-
-
| MJV070 || 7-22-08 || ig1094 || Clone #2 || ca998 || Result || [[Team:UC Berkeley/Notebook/MJV/MJV070 | MJV070]]
+
| MJV070 || 7-22-08 || ig1094 || Clone #2 || ca998 || wrong part (its {ihfB!}) || [[Team:UC Berkeley/Notebook/MJV/MJV070 | MJV070]]
|-
|-
-
| MJV071 || 7-22-08 || ig1098 || Clone #6 || ca998 || Result || [[Team:UC Berkeley/Notebook/MJV/MJV071 | MJV071]]
+
| MJV071 || 7-22-08 || ig1098 || Clone #6 || ca998 || wrong part (doesn't even look like it's in BBb) || [[Team:UC Berkeley/Notebook/MJV/MJV071 | MJV071]]
|-
|-
-
| MJV072 || 7-22-08 || ig1091 || Clone #1 || ca998 || Result || [[Team:UC Berkeley/Notebook/MJV/MJV072 | MJV072]]
+
| MJV072 || 7-22-08 || ig1091 || Clone #1 || ca998 || Perfect partial || [[Team:UC Berkeley/Notebook/MJV/MJV072 | MJV072]]
|-
|-
-
| MJV072 || 7-22-08 || ig1091 || Clone #1 || g00101 || Result || [[Team:UC Berkeley/Notebook/MJV/MJV073 | MJV073]]
+
| MJV072 || 7-22-08 || ig1091 || Clone #1 || g00101 || Perfect partial || [[Team:UC Berkeley/Notebook/MJV/MJV073 | MJV073]]
|-
|-
| MJV074 || Date || Plasmid || Clone # || Oligo || Result || [[Team:UC Berkeley/Notebook/MJV/MJV074 | MJV074]]
| MJV074 || Date || Plasmid || Clone # || Oligo || Result || [[Team:UC Berkeley/Notebook/MJV/MJV074 | MJV074]]
|-
|-
-
| MJV075 || Date || Plasmid || Clone # || Oligo || Result || [[Team:UC Berkeley/Notebook/MJV/MJV075 | MJV075]]
+
| MJV075 || 7-23-08 || ig1124 || Clone #1 || ca998 || Perfect || [[Team:UC Berkeley/Notebook/MJV/MJV075 | MJV075]]
|-
|-
-
| MJV076 || Date || Plasmid || Clone # || Oligo || Result || [[Team:UC Berkeley/Notebook/MJV/MJV076 | MJV076]]
+
| MJV076 || 7-23-08 || ig114 || Clone #1 || ca998 || Bad read || [[Team:UC Berkeley/Notebook/MJV/MJV076 | MJV076]]
|-
|-
-
| MJV077 || Date || Plasmid || Clone # || Oligo || Result || [[Team:UC Berkeley/Notebook/MJV/MJV077 | MJV077]]
+
| MJV077 || 7-24-08 || mv4 || Clone #1 || ca998 || wrong part (doesn't even look like it's in BBb) || [[Team:UC Berkeley/Notebook/MJV/MJV077 | MJV077]]
|-
|-
-
| MJV078 || Date || Plasmid || Clone # || Oligo || Result || [[Team:UC Berkeley/Notebook/MJV/MJV078 | MJV078]]
+
| MJV078 || 7-24-08 || mv7 || Clone #2 || ca998 || wrong part (rbs_BamHI part is missing) || [[Team:UC Berkeley/Notebook/MJV/MJV078 | MJV078]]
|-
|-
-
| MJV079 || Date || Plasmid || Clone # || Oligo || Result || [[Team:UC Berkeley/Notebook/MJV/MJV079 | MJV079]]
+
| MJV079 || 7-25-08 || ig1090 || Clone #1 || ca998 || perfect partial--insertion is an artifact of sequencing || [[Team:UC Berkeley/Notebook/MJV/MJV079 | MJV079]]
|-
|-
-
| MJV080 || Date || Plasmid || Clone # || Oligo || Result || [[Team:UC Berkeley/Notebook/MJV/MJV080 | MJV080]]
+
| MJV080 || 7-25-08 || ig117 || Clone #1 || ca998 || perfect partial || [[Team:UC Berkeley/Notebook/MJV/MJV080 | MJV080]]
|-
|-
-
| MJV081 || Date || Plasmid || Clone # || Oligo || Result || [[Team:UC Berkeley/Notebook/MJV/MJV081 | MJV081]]
+
| MJV081 || 7-25-08 || mv3 || Clone #2 || ca998 || perfect || [[Team:UC Berkeley/Notebook/MJV/MJV081 | MJV081]]
|-
|-
-
| MJV082 || Date || Plasmid || Clone # || Oligo || Result || [[Team:UC Berkeley/Notebook/MJV/MJV082 | MJV082]]
+
| MJV078 || 7-24-08 || mv7 || Clone #2 || g00101 || perfect partial || [[Team:UC Berkeley/Notebook/MJV/MJV082 | MJV082]]
|-
|-
-
| MJV083 || Date || Plasmid || Clone # || Oligo || Result || [[Team:UC Berkeley/Notebook/MJV/MJV083 | MJV083]]
+
| MJV079 || 7-25-08 || ig1090 || Clone #1 || g00101 || perfect partial || [[Team:UC Berkeley/Notebook/MJV/MJV083 | MJV083]]
|-
|-
-
| MJV084 || Date || Plasmid || Clone # || Oligo || Result || [[Team:UC Berkeley/Notebook/MJV/MJV084 | MJV084]]
+
| MJV076 || 7-25-08 || ig114 || Clone #2 || ca998 || perfect partial || [[Team:UC Berkeley/Notebook/MJV/MJV084 | MJV084]]
|-
|-
-
| MJV085 || Date || Plasmid || Clone # || Oligo || Result || [[Team:UC Berkeley/Notebook/MJV/MJV085 | MJV085]]
+
| MJV086 || 7-28-08 || mv1 || Clone #4 || ca998 || perfect || [[Team:UC Berkeley/Notebook/MJV/MJV085 | MJV085]]
 +
|-
 +
| MJV087 || 7-28-08 || ig1094 || Clone #4 || ca998 || perfect partial || [[Team:UC Berkeley/Notebook/MJV/MJV086 | MJV086]]
 +
|-
 +
| MJV087 || 7-28-08 || ig1094 || Clone #4 || g00101 || wrong sample? || [[Team:UC Berkeley/Notebook/MJV/MJV087 | MJV087]]
 +
|-
 +
| MJV088 || 7-28-08 || ig1098 || Clone #4 || ca998 || wrong part  (it's {<Cre>}) || [[Team:UC Berkeley/Notebook/MJV/MJV088 | MJV088]]
 +
|-
 +
| MJV089 || 7-29-08 || ig1098 || Clone #7 || ca998 || wrong part (doesn't even look like it's BBb) || [[Team:UC Berkeley/Notebook/MJV/MJV089 | MJV089]]
 +
|-
 +
| MJV089 || 7-31-08 || ptet [C/K] || Clone #1 || ca998 || correct part, but deletion in the vector between BamHI site and BBb scar || [[Team:UC Berkeley/Notebook/MJV/MJV089_1 | MJV089]]
 +
|-
 +
| MJV090 || 7-31-08 || mv20 || Clone #1 || ca998 || perfect || [[Team:UC Berkeley/Notebook/MJV/MJV090 | MJV090]]
 +
|-
 +
| MJV091 || 8-1-08 || ptet [C/K] || Clone #2 || ca998 || correct part, but deletion in the vector between BamHI site and BBb scar || [[Team:UC Berkeley/Notebook/MJV/MJV091 | MJV091]]
 +
|-
 +
| MJV092 || 8-04-08 || mv16 [A/C] || Clone #1 || ca998 || Perfect Partial || [[Team:UC Berkeley/Notebook/MJV/MJV092 | MJV092]]
 +
|-
 +
| MJV093 || 8-04-08 || mv23 [C/A] || Clone #1 || ca998 || Perfect || [[Team:UC Berkeley/Notebook/MJV/MJV093 | MJV093]]
 +
|-
 +
| MJV094 || 8-05-08 || pBjh1600-K112120 || Clone #2 || ca998 || Perfect || [[Team:UC Berkeley/Notebook/MJV/MJV094 | MJV094]]
 +
|-
 +
| MJV095 || 8-05-08 || ig1094 || Clone #1 || ca998 || Perfect partial || [[Team:UC Berkeley/Notebook/MJV/MJV095 | MJV095]]
 +
|-
 +
| MJV096 || 8-05-08 || pBad[K/C] || Clone #1 || ca998 || Ok partial (has point mutations) || [[Team:UC Berkeley/Notebook/MJV/MJV096 | MJV096]]
 +
|-
 +
| MJV097 || 8-5-08 || mv10 [C/K] || Clone #2 || ca998 || Perfect || [[Team:UC Berkeley/Notebook/MJV/MJV097 | MJV097]]
 +
|-
 +
| MJV098 || 8-5-08 || mv15 [K/A] || Clone #5 || ca998 || missing BamHI part || [[Team:UC Berkeley/Notebook/MJV/MJV98 | MJV098]]
 +
|-
 +
| MJV099 || 8-7-08 || pBca1256-OriV || Clone #1 || ca998 || wrong part-something else from genome || [[Team:UC Berkeley/Notebook/MJV/MJV099 | MJV099]]
 +
|-
 +
| MJV100 || 8-7-08 || pBca1256-OriV || Clone #2 || ca998 || wrong part-something else from genome || [[Team:UC Berkeley/Notebook/MJV/MJV100 | MJV100]]
 +
|-
 +
| MJV101 || 8-7-08 || pBca1256-attR2 || Clone #1 || ca998 || same point mutation that Dan had || [[Team:UC Berkeley/Notebook/MJV/MJV101 | MJV101]]
 +
|-
 +
| MJV102 || Date || Plasmid || Clone # || Oligo || Result || [[Team:UC Berkeley/Notebook/MJV/MJV102 | MJV102]]
|}
|}
----
----

Latest revision as of 20:56, 26 August 2008

Tube ID Date Plasmid Clone # Oligo Result File
MV_G3 6-20-08 pBca1256-K112106 Clone #1 ca998 Perfect MJV001
MV_G1 6-20-08 pBca1256-K112107 Clone #1 ca998 Perfect MJV002
MV_F6 6-20-08 pBca1256-K112108 Clone #1 ca998 Perfect MJV003
MV_F5 6-20-08 pBca1256-K112117 Clone #1 ca998 Perfect MJV004
MV_F4 6-20-08 pBca1256-K112121 Clone #1 ca998 Perfect MJV005
MV_F3 6-20-08 pBca1256-K112103 Clone #1 ca998 Bad read MJV006
MV_F2 6-20-08 pBca1256-K112116 Clone #1 ca998 Huge deletion MJV007
MV_F1 6-20-08 pBca1256-K112120 Clone #1 ca998 Bad read MJV008
DV_4 6-20-08 pBca1256-K112100 Clone #1 ca998 Perfect Partial MJV009
MV_rrnB 6-20-08 pBca1256-K112101 Clone #1 ca998 Perfect Partial MJV010
MV_C3 6-20-08 pBca1256-K112102 Clone #1 ca998 Perfect Partial MJV011
MV_H5 6-20-08 pBca1256-K112115 Clone #1 ca998 Perfect Partial MJV012
MV_H4 6-20-08 pBca1256-K112119 Clone #1 ca998 Perfect Partial MJV013
MV_H3 6-20-08 pBca1256-K112105 Clone #1 ca998 Point mutation (not silent) MJV014
MV_H2 6-20-08 pBca1256-K112118 Clone #1 ca998 Perfect MJV015
ig001 6-21-08 pBca1256-K112109 Clone #5 ca998 Perfect Partial MJV016
ig001 6-21-08 pBca1256-K112109 Clone #5 g00101 Perfect Partial MJV017
ig002 6-21-08 pBca1256-K112109 Clone #6 ca998 Point mutations MJV018
ig3 6-21-08 pBca1256-K112109 Clone #7 ca998 Bad read MJV019
ig5 6-21-08 pBca1256-K112103 Clone #2 ca998 3 point mutations MJV020
ig4 6-21-08 pBca1256-K112104 Clone #1 ca998 point mutation (not silent) MJV021
ig6 6-21-08 pBca1256-K112105 Clone #2 ca998 Perfect MJV022
ig7 6-21-08 pBca1256-K112116 Clone #2 ca998 point mutation (not silent) MJV023
ig8 6-21-08 pBca1256-K112120 Clone #2 ca998 Bad read MJV024
DV_4 6-21-08 pBca1256-K112100 Clone #1 g00101 Bad read MJV025
MV_rrnB 6-21-08 pBca1256-K112101 Clone #1 g00101 Wrong part MJV026
MV_C3 6-21-08 pBca1256-K112102 Clone #1 g00101 Wrong Part MJV027
MV_H5 6-21-08 pBca1256-K112115 Clone #1 g00101 Bad read MJV028
MV_H4 6-21-08 pBca1256-K112119 Clone #1 g00101 Perfect Partial MJV029
ig16 6-23-08 pBca1256-K112103 Clone #3 ca998 Point Mutation (not silent) MJV030
ig17 6-23-08 pBca1256-K112116 Clone #3 ca998 Parent vector (P_tet promoter part) MJV031
ig18 6-23-08 pBca1256-K112100 Clone #1 g00101 Perfect partial MJV032
ig19 6-23-08 pBca1256-K112101 Clone #1 g00101 Perfect partial MJV033
ig20 6-23-08 pBca1256-K112102 Clone #1 g00101 Perfect partial MJV034
ig21 6-23-08 pBca1256-K112115 Clone #1 g00101 Perfect partial MJV035
MJV036 6-25-08 pBca1256-K112110 Clone #1 ca998 Deletion-might be an artifact of sequencing MJV036
MJV037 6-25-08 pBca1256-K112111 Clone #1 ca998 Perfect partial MJV037
MJV038 6-25-08 pBca1256-K112112 Clone #1 ca998 Perfect partial MJV038
MJV039 6-25-08 pBca1256-K112113 Clone #1 ca998 Perfect partial MJV039
MJV040 6-25-08 pBca1256-K112114 Clone #1 ca998 Perfect partial MJV040
MJV041 6-25-08 pBca1256-K112103 Clone #4 ca998 Perfect MJV041
MJV042 6-25-08 pBca1256-K112104 Clone #2 ca998 Wrong part of plasmid-insert missing MJV042
MJV043 6-25-08 pBca1256-K112116 Clone #4 ca998 Bad read MJV043
MJV044 6-25-08 pBca1256-K112122 Clone #1 ca998 Perfect partial MJV044
MJV045 6-25-08 pBca1256-K112123 Clone #1 ca998 Perfect MJV045
MJV036 6-25-08 pBca1256-K112110 Clone #1 g00101 Perfect partial MJV046
MJV037 6-25-08 pBca1256-K112111 Clone #1 g00101 Perfect partial MJV047
MJV038 6-25-08 pBca1256-K112112 Clone #1 g00101 Perfect partial MJV048
MJV039 6-25-08 pBca1256-K112113 Clone #1 g00101 Perfect partial MJV049
MJV040 6-25-08 pBca1256-K112114 Clone #1 g00101 Perfect partial MJV050
MJV051 6-26-08 pBca1256-K112116 Clone #5 ca998 Point mutation (not silent) MJV051
MJV043 6-26-08 pBca1256-K112116 Clone #4 ca998 Bad read MJV052
MJV044 6-27-08 pBca1256-K112122 Clone #1 g00101 Perfect partial MJV053
MJV054 6-27-08 pBca1256-K112110 Clone #2 ca998 Perfect partial MJV054
MJV054 6-27-08 pBca1256-K112110 Clone #2 g00101 Perfect partial MJV055
MJV056 6-30-08 pBjh1600-K112104 Clone #1 ca998 Perfect MJV056
MJV057 6-30-08 pBjh1600-K112104 Clone #2 ca998 Perfect MJV057
MJV058 6-30-08 pBjh1600-K112116 Clone #1 ca998 Bad Read MJV058
MJV059 6-30-08 pBjh1600-K112116 Clone #3 ca998 Perfect MJV059
MJV060 6-30-08 pBjh1600-K112120 Clone #2 ca998 Perfect MJV060
MJV061 6-30-08 pBjh1600-K112120 Clone #3 ca998 Bad Read MJV061
MJV062 7-19-08 mv15 Clone #2 ca998 wrong part (missing BamHI from rbs_phoApp.BamHI!) MJV062
MJV063 7-19-08 mv16 Clone #3 ca998 wrong part (a~pelB.rbs_ligase! instead of rbs_pelB.ligase!) MJV063
MJV064 7-22-08 mv1 Clone #1 ca998 wrong part (doesn't even look like it's in BBb) MJV064
MJV065 7-22-08 mv10 Clone #1 ca998 Perfect MJV065
MJV066 7-22-08 mv10 Clone #3 ca998 Bad read MJV066
MJV067 7-22-08 mv11 Clone #6 ca998 Perfect partial MJV067
MJV068 7-22-08 mv11 Clone #8 ca998 Perfect partial MJV068
MJV069 7-22-08 ig161 Clone #2 ca998 Perfect MJV069
MJV070 7-22-08 ig1094 Clone #2 ca998 wrong part (its {ihfB!}) MJV070
MJV071 7-22-08 ig1098 Clone #6 ca998 wrong part (doesn't even look like it's in BBb) MJV071
MJV072 7-22-08 ig1091 Clone #1 ca998 Perfect partial MJV072
MJV072 7-22-08 ig1091 Clone #1 g00101 Perfect partial MJV073
MJV074 Date Plasmid Clone # Oligo Result MJV074
MJV075 7-23-08 ig1124 Clone #1 ca998 Perfect MJV075
MJV076 7-23-08 ig114 Clone #1 ca998 Bad read MJV076
MJV077 7-24-08 mv4 Clone #1 ca998 wrong part (doesn't even look like it's in BBb) MJV077
MJV078 7-24-08 mv7 Clone #2 ca998 wrong part (rbs_BamHI part is missing) MJV078
MJV079 7-25-08 ig1090 Clone #1 ca998 perfect partial--insertion is an artifact of sequencing MJV079
MJV080 7-25-08 ig117 Clone #1 ca998 perfect partial MJV080
MJV081 7-25-08 mv3 Clone #2 ca998 perfect MJV081
MJV078 7-24-08 mv7 Clone #2 g00101 perfect partial MJV082
MJV079 7-25-08 ig1090 Clone #1 g00101 perfect partial MJV083
MJV076 7-25-08 ig114 Clone #2 ca998 perfect partial MJV084
MJV086 7-28-08 mv1 Clone #4 ca998 perfect MJV085
MJV087 7-28-08 ig1094 Clone #4 ca998 perfect partial MJV086
MJV087 7-28-08 ig1094 Clone #4 g00101 wrong sample? MJV087
MJV088 7-28-08 ig1098 Clone #4 ca998 wrong part (it's {<Cre>}) MJV088
MJV089 7-29-08 ig1098 Clone #7 ca998 wrong part (doesn't even look like it's BBb) MJV089
MJV089 7-31-08 ptet [C/K] Clone #1 ca998 correct part, but deletion in the vector between BamHI site and BBb scar MJV089
MJV090 7-31-08 mv20 Clone #1 ca998 perfect MJV090
MJV091 8-1-08 ptet [C/K] Clone #2 ca998 correct part, but deletion in the vector between BamHI site and BBb scar MJV091
MJV092 8-04-08 mv16 [A/C] Clone #1 ca998 Perfect Partial MJV092
MJV093 8-04-08 mv23 [C/A] Clone #1 ca998 Perfect MJV093
MJV094 8-05-08 pBjh1600-K112120 Clone #2 ca998 Perfect MJV094
MJV095 8-05-08 ig1094 Clone #1 ca998 Perfect partial MJV095
MJV096 8-05-08 pBad[K/C] Clone #1 ca998 Ok partial (has point mutations) MJV096
MJV097 8-5-08 mv10 [C/K] Clone #2 ca998 Perfect MJV097
MJV098 8-5-08 mv15 [K/A] Clone #5 ca998 missing BamHI part MJV098
MJV099 8-7-08 pBca1256-OriV Clone #1 ca998 wrong part-something else from genome MJV099
MJV100 8-7-08 pBca1256-OriV Clone #2 ca998 wrong part-something else from genome MJV100
MJV101 8-7-08 pBca1256-attR2 Clone #1 ca998 same point mutation that Dan had MJV101
MJV102 Date Plasmid Clone # Oligo Result MJV102
Madhvi's Notebook
UC Berkeley Team Homepage
Retrieved from "http://2008.igem.org/Template:Team:UC_Berkeley/Notebook/MJV_sequencing"