Team:Paris/Modeling/first parameters/premiermodele

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{{Paris/Menu}}
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To go back to the previous page : [[Team:Paris/Modeling/first parameters|First Parameters Obtained]]
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<div class=Section1>
<div class=Section1>
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<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
 
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class=GramE><span lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";
 
-
color:blue;mso-ansi-language:EN-GB'>function</span></span><span lang=EN-GB
 
-
style='font-size:10.0pt;font-family:"Courier New";color:black;mso-ansi-language:
 
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EN-GB'> dx = modele(t,x,alpha,beta)</span><span lang=EN-GB style='font-family:
 
-
"Courier New";mso-bidi-font-family:"Times New Roman";mso-ansi-language:EN-GB'><o:p></o:p></span></p>
 
-
 
-
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
 
-
lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:forestgreen;
 
-
mso-ansi-language:EN-GB'>% <span class=GramE>This</span> function defines the
 
-
ordinary differential equations that provide </span><span lang=EN-GB
 
-
style='font-family:"Courier New";mso-bidi-font-family:"Times New Roman";
 
-
mso-ansi-language:EN-GB'><o:p></o:p></span></p>
 
-
 
-
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
 
-
class=GramE><span lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";
 
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color:forestgreen;mso-ansi-language:EN-GB'>% a large scale description of our
 
-
system.</span></span><span lang=EN-GB style='font-family:"Courier New";
 
-
mso-bidi-font-family:"Times New Roman";mso-ansi-language:EN-GB'><o:p></o:p></span></p>
 
-
 
-
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
 
-
lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:forestgreen;
 
-
mso-ansi-language:EN-GB'>%</span><span lang=EN-GB style='font-family:"Courier New";
 
-
mso-bidi-font-family:"Times New Roman";mso-ansi-language:EN-GB'><o:p></o:p></span></p>
 
-
 
-
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
 
-
lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:forestgreen;
 
-
mso-ansi-language:EN-GB'>% CALL: [dx] = <span class=GramE>modele(</span>t, x,
 
-
alpha, beta)</span><span lang=EN-GB style='font-family:"Courier New";
 
-
mso-bidi-font-family:"Times New Roman";mso-ansi-language:EN-GB'><o:p></o:p></span></p>
 
-
 
-
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
 
-
lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:forestgreen;
 
-
mso-ansi-language:EN-GB'>%<span style='mso-spacerun:yes'>  </span><span
 
-
class=GramE>t<span style='mso-spacerun:yes'>  </span>=</span> scalar value,
 
-
time</span><span lang=EN-GB style='font-family:"Courier New";mso-bidi-font-family:
 
-
"Times New Roman";mso-ansi-language:EN-GB'><o:p></o:p></span></p>
 
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:forestgreen;
lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:forestgreen;
-
mso-ansi-language:EN-GB'>%<span style='mso-spacerun:yes'>  </span><span
+
mso-ansi-language:EN-GB'>% Main function for the simulations</span><span
-
class=GramE>x<span style='mso-spacerun:yes'>  </span>=</span> vector
+
-
representing the concentrations of the genes ( 5 genes )</span><span
+
-
lang=EN-GB style='font-family:"Courier New";mso-bidi-font-family:"Times New Roman";
+
-
mso-ansi-language:EN-GB'><o:p></o:p></span></p>
+
-
 
+
-
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
+
-
lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:forestgreen;
+
-
mso-ansi-language:EN-GB'>%<span style='mso-spacerun:yes'>  </span>alpha = <span
+
-
class=GramE>parameter<span style='mso-spacerun:yes'>  </span>of</span> a Hill
+
-
function, we will change it for robustness</span><span lang=EN-GB
+
-
style='font-family:"Courier New";mso-bidi-font-family:"Times New Roman";
+
-
mso-ansi-language:EN-GB'><o:p></o:p></span></p>
+
-
 
+
-
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
+
-
class=GramE><span lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";
+
-
color:forestgreen;mso-ansi-language:EN-GB'>%<span style='mso-spacerun:yes'> 
+
-
</span>studies.</span></span><span lang=EN-GB style='font-family:"Courier New";
+
-
mso-bidi-font-family:"Times New Roman";mso-ansi-language:EN-GB'><o:p></o:p></span></p>
+
-
 
+
-
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
+
-
lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:forestgreen;
+
-
mso-ansi-language:EN-GB'>%<span style='mso-spacerun:yes'>  </span>beta = <span
+
-
class=GramE>parameter<span style='mso-spacerun:yes'>  </span>of</span> a Hill
+
-
function, we will change it for robustness</span><span lang=EN-GB
+
-
style='font-family:"Courier New";mso-bidi-font-family:"Times New Roman";
+
-
mso-ansi-language:EN-GB'><o:p></o:p></span></p>
+
-
 
+
-
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
+
-
class=GramE><span lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";
+
-
color:forestgreen;mso-ansi-language:EN-GB'>%<span style='mso-spacerun:yes'> 
+
-
 
+
-
</span>studies.</span></span><span lang=EN-GB style='font-family:"Courier New";
+
-
mso-bidi-font-family:"Times New Roman";mso-ansi-language:EN-GB'><o:p></o:p></span></p>
+
-
 
+
-
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
+
-
lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:forestgreen;
+
-
mso-ansi-language:EN-GB'>%<span style='mso-spacerun:yes'>  </span>dx =
+
-
derivative of the concentrations</span><span lang=EN-GB style='font-family:
+
-
"Courier New";mso-bidi-font-family:"Times New Roman";mso-ansi-language:EN-GB'><o:p></o:p></span></p>
+
-
 
+
-
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
+
-
lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:forestgreen;
+
-
mso-ansi-language:EN-GB'>%</span><span lang=EN-GB style='font-family:"Courier New";
+
-
mso-bidi-font-family:"Times New Roman";mso-ansi-language:EN-GB'><o:p></o:p></span></p>
+
-
 
+
-
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
+
-
lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:forestgreen;
+
-
mso-ansi-language:EN-GB'>% <span class=GramE>This</span> function uses the
+
-
following formalism dx=x'=f(x)</span><span lang=EN-GB style='font-family:"Courier New";
+
-
mso-bidi-font-family:"Times New Roman";mso-ansi-language:EN-GB'><o:p></o:p></span></p>
+
-
 
+
-
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
+
-
lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:forestgreen;
+
-
mso-ansi-language:EN-GB'>%</span><span lang=EN-GB style='font-family:"Courier New";
+
-
mso-bidi-font-family:"Times New Roman";mso-ansi-language:EN-GB'><o:p></o:p></span></p>
+
-
 
+
-
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
+
-
lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:forestgreen;
+
-
mso-ansi-language:EN-GB'>% <span class=GramE>x(</span>1) : FlhDC</span><span
+
-
lang=EN-GB style='font-family:"Courier New";mso-bidi-font-family:"Times New Roman";
+
-
mso-ansi-language:EN-GB'><o:p></o:p></span></p>
+
-
 
+
-
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
+
-
lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:forestgreen;
+
-
mso-ansi-language:EN-GB'>% <span class=GramE>x(</span>2) : FliA</span><span
+
-
lang=EN-GB style='font-family:"Courier New";mso-bidi-font-family:"Times New Roman";
+
-
mso-ansi-language:EN-GB'><o:p></o:p></span></p>
+
-
 
+
-
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
+
-
lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:forestgreen;
+
-
mso-ansi-language:EN-GB'>% <span class=GramE>x(</span>3) : Z1</span><span
+
-
lang=EN-GB style='font-family:"Courier New";mso-bidi-font-family:"Times New Roman";
+
-
mso-ansi-language:EN-GB'><o:p></o:p></span></p>
+
-
 
+
-
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
+
-
lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:forestgreen;
+
-
mso-ansi-language:EN-GB'>% <span class=GramE>x(</span>4) : Z2</span><span
+
-
lang=EN-GB style='font-family:"Courier New";mso-bidi-font-family:"Times New Roman";
+
-
mso-ansi-language:EN-GB'><o:p></o:p></span></p>
+
-
 
+
-
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
+
-
lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:forestgreen;
+
-
mso-ansi-language:EN-GB'>% <span class=GramE>x(</span>5) : Z3</span><span
+
lang=EN-GB style='font-family:"Courier New";mso-bidi-font-family:"Times New Roman";
lang=EN-GB style='font-family:"Courier New";mso-bidi-font-family:"Times New Roman";
mso-ansi-language:EN-GB'><o:p></o:p></span></p>
mso-ansi-language:EN-GB'><o:p></o:p></span></p>
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<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:forestgreen;
lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:forestgreen;
-
mso-ansi-language:EN-GB'><span style='mso-spacerun:yes'> </span></span><span
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mso-ansi-language:EN-GB'>%% File to use to <span class=GramE>obtain :</span></span><span
lang=EN-GB style='font-family:"Courier New";mso-bidi-font-family:"Times New Roman";
lang=EN-GB style='font-family:"Courier New";mso-bidi-font-family:"Times New Roman";
mso-ansi-language:EN-GB'><o:p></o:p></span></p>
mso-ansi-language:EN-GB'><o:p></o:p></span></p>
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<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:forestgreen;
lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:forestgreen;
-
mso-ansi-language:EN-GB'>%% Parameters</span><span lang=EN-GB style='font-family:
+
mso-ansi-language:EN-GB'>%<span style='mso-spacerun:yes'>  </span>1 - The
-
"Courier New";mso-bidi-font-family:"Times New Roman";mso-ansi-language:EN-GB'><o:p></o:p></span></p>
+
ouput of the system</span><span lang=EN-GB style='font-family:"Courier New";
 +
mso-bidi-font-family:"Times New Roman";mso-ansi-language:EN-GB'><o:p></o:p></span></p>
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:forestgreen;
lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:forestgreen;
-
mso-ansi-language:EN-GB'><span style='mso-spacerun:yes'> </span></span><span
+
mso-ansi-language:EN-GB'>%<span style='mso-spacerun:yes'>   </span>2 - A
-
lang=EN-GB style='font-family:"Courier New";mso-bidi-font-family:"Times New Roman";
+
visualization of that output</span><span lang=EN-GB style='font-family:"Courier New";
-
mso-ansi-language:EN-GB'><o:p></o:p></span></p>
+
-
 
+
-
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
+
-
lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:black;
+
-
mso-ansi-language:EN-GB'>n=6;<span style='mso-tab-count:1'>  </span><span
+
-
style='mso-tab-count:4'>                        </span></span><span lang=EN-GB
+
-
style='font-family:"Courier New";mso-bidi-font-family:"Times New Roman";
+
-
mso-ansi-language:EN-GB'><o:p></o:p></span></p>
+
-
 
+
-
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
+
-
lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:black;
+
-
mso-ansi-language:EN-GB'>B=10;</span><span lang=EN-GB style='font-family:"Courier New";
+
-
mso-bidi-font-family:"Times New Roman";mso-ansi-language:EN-GB'><o:p></o:p></span></p>
+
-
 
+
-
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
+
-
class=GramE><span lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";
+
-
color:black;mso-ansi-language:EN-GB'>k(</span></span><span lang=EN-GB
+
-
style='font-size:10.0pt;font-family:"Courier New";color:black;mso-ansi-language:
+
-
EN-GB'>1)=10; </span><span lang=EN-GB style='font-family:"Courier New";
+
-
mso-bidi-font-family:"Times New Roman";mso-ansi-language:EN-GB'><o:p></o:p></span></p>
+
-
 
+
-
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
+
-
class=GramE><span lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";
+
-
color:black;mso-ansi-language:EN-GB'>k(</span></span><span lang=EN-GB
+
-
style='font-size:10.0pt;font-family:"Courier New";color:black;mso-ansi-language:
+
-
EN-GB'>2)=0.2; </span><span lang=EN-GB style='font-family:"Courier New";
+
-
mso-bidi-font-family:"Times New Roman";mso-ansi-language:EN-GB'><o:p></o:p></span></p>
+
-
 
+
-
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
+
-
class=GramE><span lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";
+
-
color:black;mso-ansi-language:EN-GB'>k(</span></span><span lang=EN-GB
+
-
style='font-size:10.0pt;font-family:"Courier New";color:black;mso-ansi-language:
+
-
EN-GB'>3)=beta;</span><span lang=EN-GB style='font-family:"Courier New";
+
mso-bidi-font-family:"Times New Roman";mso-ansi-language:EN-GB'><o:p></o:p></span></p>
mso-bidi-font-family:"Times New Roman";mso-ansi-language:EN-GB'><o:p></o:p></span></p>
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:forestgreen;
lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:forestgreen;
-
mso-ansi-language:EN-GB'>%<span class=GramE>k(</span>3)=10;</span><span
+
mso-ansi-language:EN-GB'>%<span style='mso-spacerun:yes'>   </span>3 - The
 +
value of a criteria describing whether there are oscillations</span><span
lang=EN-GB style='font-family:"Courier New";mso-bidi-font-family:"Times New Roman";
lang=EN-GB style='font-family:"Courier New";mso-bidi-font-family:"Times New Roman";
mso-ansi-language:EN-GB'><o:p></o:p></span></p>
mso-ansi-language:EN-GB'><o:p></o:p></span></p>
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
-
class=GramE><span lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";
+
lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:forestgreen;
-
color:black;mso-ansi-language:EN-GB'>k(</span></span><span lang=EN-GB
+
-
style='font-size:10.0pt;font-family:"Courier New";color:black;mso-ansi-language:
+
-
EN-GB'>5)=n;</span><span lang=EN-GB style='font-family:"Courier New";
+
-
mso-bidi-font-family:"Times New Roman";mso-ansi-language:EN-GB'><o:p></o:p></span></p>
+
-
 
+
-
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
+
-
lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:black;
+
mso-ansi-language:EN-GB'><span style='mso-spacerun:yes'> </span></span><span
mso-ansi-language:EN-GB'><span style='mso-spacerun:yes'> </span></span><span
lang=EN-GB style='font-family:"Courier New";mso-bidi-font-family:"Times New Roman";
lang=EN-GB style='font-family:"Courier New";mso-bidi-font-family:"Times New Roman";
Line 308: Line 159:
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
-
class=GramE><span lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";
+
class=GramE><span style='font-size:10.0pt;font-family:"Courier New";color:black'>tmax=</span></span><span
-
color:black;mso-ansi-language:EN-GB'>p(</span></span><span lang=EN-GB
+
style='font-size:10.0pt;font-family:"Courier New";color:black'>200;</span><span
-
style='font-size:10.0pt;font-family:"Courier New";color:black;mso-ansi-language:
+
style='font-family:"Courier New";mso-bidi-font-family:"Times New Roman"'><o:p></o:p></span></p>
-
EN-GB'>4)=5;</span><span lang=EN-GB style='font-family:"Courier New";
+
-
mso-bidi-font-family:"Times New Roman";mso-ansi-language:EN-GB'><o:p></o:p></span></p>
+
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
-
style='font-size:10.0pt;font-family:"Courier New";color:black'>p(5)=B;</span><span
+
style='font-size:10.0pt;font-family:"Courier New";color:black'>t<span
-
style='font-family:"Courier New";mso-bidi-font-family:"Times New Roman"'><o:p></o:p></span></p>
+
class=GramE>=[</span>0:0.1:tmax];</span><span style='font-family:"Courier New";
 +
mso-bidi-font-family:"Times New Roman"'><o:p></o:p></span></p>
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
-
style='font-size:10.0pt;font-family:"Courier New";color:black'>p(6)=n;</span><span
+
style='font-size:10.0pt;font-family:"Courier New";color:black'>Prop=0.3;</span><span
style='font-family:"Courier New";mso-bidi-font-family:"Times New Roman"'><o:p></o:p></span></p>
style='font-family:"Courier New";mso-bidi-font-family:"Times New Roman"'><o:p></o:p></span></p>
Line 328: Line 178:
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
-
style='font-size:10.0pt;font-family:"Courier New";color:black'>p(7)=20;</span><span
+
style='font-size:10.0pt;font-family:"Courier New";color:black'>V0<span
-
style='font-family:"Courier New";mso-bidi-font-family:"Times New Roman"'><o:p></o:p></span></p>
+
class=GramE>=[</span>10;0;0;0;0];</span><span style='font-family:"Courier New";
-
 
+
mso-bidi-font-family:"Times New Roman"'><o:p></o:p></span></p>
-
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
+
-
class=GramE><span lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";
+
-
color:black;mso-ansi-language:EN-GB'>p(</span></span><span lang=EN-GB
+
-
style='font-size:10.0pt;font-family:"Courier New";color:black;mso-ansi-language:
+
-
EN-GB'>8)=B;</span><span lang=EN-GB style='font-family:"Courier New";
+
-
mso-bidi-font-family:"Times New Roman";mso-ansi-language:EN-GB'><o:p></o:p></span></p>
+
-
 
+
-
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
+
-
class=GramE><span lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";
+
-
color:black;mso-ansi-language:EN-GB'>p(</span></span><span lang=EN-GB
+
-
style='font-size:10.0pt;font-family:"Courier New";color:black;mso-ansi-language:
+
-
EN-GB'>9)=n;</span><span lang=EN-GB style='font-family:"Courier New";
+
-
mso-bidi-font-family:"Times New Roman";mso-ansi-language:EN-GB'><o:p></o:p></span></p>
+
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:black;
lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:black;
-
mso-ansi-language:EN-GB'><span style='mso-spacerun:yes'> </span></span><span
+
mso-ansi-language:EN-GB'>V=simul(t,V0,40,20);</span><span lang=EN-GB
-
lang=EN-GB style='font-family:"Courier New";mso-bidi-font-family:"Times New Roman";
+
style='font-family:"Courier New";mso-bidi-font-family:"Times New Roman";
mso-ansi-language:EN-GB'><o:p></o:p></span></p>
mso-ansi-language:EN-GB'><o:p></o:p></span></p>
-
 
-
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
 
-
class=GramE><span lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";
 
-
color:black;mso-ansi-language:EN-GB'>p(</span></span><span lang=EN-GB
 
-
style='font-size:10.0pt;font-family:"Courier New";color:black;mso-ansi-language:
 
-
EN-GB'>10)=10;</span><span lang=EN-GB style='font-family:"Courier New";
 
-
mso-bidi-font-family:"Times New Roman";mso-ansi-language:EN-GB'><o:p></o:p></span></p>
 
-
 
-
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
 
-
class=GramE><span lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";
 
-
color:black;mso-ansi-language:EN-GB'>p(</span></span><span lang=EN-GB
 
-
style='font-size:10.0pt;font-family:"Courier New";color:black;mso-ansi-language:
 
-
EN-GB'>11)=B;</span><span lang=EN-GB style='font-family:"Courier New";
 
-
mso-bidi-font-family:"Times New Roman";mso-ansi-language:EN-GB'><o:p></o:p></span></p>
 
-
 
-
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
 
-
class=GramE><span lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";
 
-
color:black;mso-ansi-language:EN-GB'>p(</span></span><span lang=EN-GB
 
-
style='font-size:10.0pt;font-family:"Courier New";color:black;mso-ansi-language:
 
-
EN-GB'>12)=n;</span><span lang=EN-GB style='font-family:"Courier New";
 
-
mso-bidi-font-family:"Times New Roman";mso-ansi-language:EN-GB'><o:p></o:p></span></p>
 
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
Line 379: Line 195:
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
-
class=GramE><span lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";
+
lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:forestgreen;
-
color:black;mso-ansi-language:EN-GB'>p(</span></span><span lang=EN-GB
+
mso-ansi-language:EN-GB'>% This paragraph was useful to describe the FIFO
-
style='font-size:10.0pt;font-family:"Courier New";color:black;mso-ansi-language:
+
process but has to be</span><span lang=EN-GB style='font-family:"Courier New";
-
EN-GB'>13)=8;</span><span lang=EN-GB style='font-family:"Courier New";
+
mso-bidi-font-family:"Times New Roman";mso-ansi-language:EN-GB'><o:p></o:p></span></p>
mso-bidi-font-family:"Times New Roman";mso-ansi-language:EN-GB'><o:p></o:p></span></p>
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
-
class=GramE><span lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";
+
lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:forestgreen;
-
color:black;mso-ansi-language:EN-GB'>p(</span></span><span lang=EN-GB
+
mso-ansi-language:EN-GB'>% modified in order to take into account the appearing
-
style='font-size:10.0pt;font-family:"Courier New";color:black;mso-ansi-language:
+
oscillations.</span><span lang=EN-GB style='font-family:"Courier New";
-
EN-GB'>14)=10;</span><span lang=EN-GB style='font-family:"Courier New";
+
mso-bidi-font-family:"Times New Roman";mso-ansi-language:EN-GB'><o:p></o:p></span></p>
mso-bidi-font-family:"Times New Roman";mso-ansi-language:EN-GB'><o:p></o:p></span></p>
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
-
class=GramE><span lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";
+
lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:forestgreen;
-
color:black;mso-ansi-language:EN-GB'>p(</span></span><span lang=EN-GB
+
mso-ansi-language:EN-GB'>%</span><span lang=EN-GB style='font-family:"Courier New";
-
style='font-size:10.0pt;font-family:"Courier New";color:black;mso-ansi-language:
+
-
EN-GB'>15)=n;</span><span lang=EN-GB style='font-family:"Courier New";
+
mso-bidi-font-family:"Times New Roman";mso-ansi-language:EN-GB'><o:p></o:p></span></p>
mso-bidi-font-family:"Times New Roman";mso-ansi-language:EN-GB'><o:p></o:p></span></p>
-
 
-
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
 
-
lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:black;
 
-
mso-ansi-language:EN-GB'><span style='mso-spacerun:yes'> </span></span><span
 
-
lang=EN-GB style='font-family:"Courier New";mso-bidi-font-family:"Times New Roman";
 
-
mso-ansi-language:EN-GB'><o:p></o:p></span></p>
 
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:forestgreen;
lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:forestgreen;
-
mso-ansi-language:EN-GB'>%<span class=GramE>p(</span>16)=20;</span><span
+
mso-ansi-language:EN-GB'>% Max=V(end,:); Find the final value, in case of 'no
-
lang=EN-GB style='font-family:"Courier New";mso-bidi-font-family:"Times New Roman";
+
oscillations signals'</span><span lang=EN-GB style='font-family:"Courier New";
-
mso-ansi-language:EN-GB'><o:p></o:p></span></p>
+
-
 
+
-
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
+
-
class=GramE><span lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";
+
-
color:black;mso-ansi-language:EN-GB'>p(</span></span><span lang=EN-GB
+
-
style='font-size:10.0pt;font-family:"Courier New";color:black;mso-ansi-language:
+
-
EN-GB'>16)=alpha;</span><span lang=EN-GB style='font-family:"Courier New";
+
mso-bidi-font-family:"Times New Roman";mso-ansi-language:EN-GB'><o:p></o:p></span></p>
mso-bidi-font-family:"Times New Roman";mso-ansi-language:EN-GB'><o:p></o:p></span></p>
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
-
class=GramE><span lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";
+
lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:forestgreen;
-
color:black;mso-ansi-language:EN-GB'>p(</span></span><span lang=EN-GB
+
mso-ansi-language:EN-GB'>% Max2=max(V);<span style='mso-spacerun:yes'>  
-
style='font-size:10.0pt;font-family:"Courier New";color:black;mso-ansi-language:
+
</span>Find the maximum</span><span lang=EN-GB style='font-family:"Courier New";
-
EN-GB'>17)=B;</span><span lang=EN-GB style='font-family:"Courier New";
+
mso-bidi-font-family:"Times New Roman";mso-ansi-language:EN-GB'><o:p></o:p></span></p>
mso-bidi-font-family:"Times New Roman";mso-ansi-language:EN-GB'><o:p></o:p></span></p>
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
-
class=GramE><span lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";
+
lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:forestgreen;
-
color:black;mso-ansi-language:EN-GB'>p(</span></span><span lang=EN-GB
+
mso-ansi-language:EN-GB'>% Seuil=Prop*Max; Define a threshold</span><span
-
style='font-size:10.0pt;font-family:"Courier New";color:black;mso-ansi-language:
+
-
EN-GB'>18)=n;</span><span lang=EN-GB style='font-family:"Courier New";
+
-
mso-bidi-font-family:"Times New Roman";mso-ansi-language:EN-GB'><o:p></o:p></span></p>
+
-
 
+
-
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
+
-
lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:black;
+
-
mso-ansi-language:EN-GB'><span style='mso-spacerun:yes'> </span></span><span
+
lang=EN-GB style='font-family:"Courier New";mso-bidi-font-family:"Times New Roman";
lang=EN-GB style='font-family:"Courier New";mso-bidi-font-family:"Times New Roman";
mso-ansi-language:EN-GB'><o:p></o:p></span></p>
mso-ansi-language:EN-GB'><o:p></o:p></span></p>
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
-
class=GramE><span lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";
+
lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:forestgreen;
-
color:black;mso-ansi-language:EN-GB'>p(</span></span><span lang=EN-GB
+
mso-ansi-language:EN-GB'>% </span><span lang=EN-GB style='font-family:"Courier New";
-
style='font-size:10.0pt;font-family:"Courier New";color:black;mso-ansi-language:
+
-
EN-GB'>19)=10;</span><span lang=EN-GB style='font-family:"Courier New";
+
mso-bidi-font-family:"Times New Roman";mso-ansi-language:EN-GB'><o:p></o:p></span></p>
mso-bidi-font-family:"Times New Roman";mso-ansi-language:EN-GB'><o:p></o:p></span></p>
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
-
class=GramE><span lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";
+
lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:forestgreen;
-
color:black;mso-ansi-language:EN-GB'>p(</span></span><span lang=EN-GB
+
mso-ansi-language:EN-GB'>% tempsSeuil=tSeuil(V,Seuil,t); Find the time
-
style='font-size:10.0pt;font-family:"Courier New";color:black;mso-ansi-language:
+
corresponding to the first</span><span lang=EN-GB style='font-family:"Courier New";
-
EN-GB'>20)=B;</span><span lang=EN-GB style='font-family:"Courier New";
+
mso-bidi-font-family:"Times New Roman";mso-ansi-language:EN-GB'><o:p></o:p></span></p>
mso-bidi-font-family:"Times New Roman";mso-ansi-language:EN-GB'><o:p></o:p></span></p>
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
-
class=GramE><span lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";
+
lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:forestgreen;
-
color:black;mso-ansi-language:EN-GB'>p(</span></span><span lang=EN-GB
+
mso-ansi-language:EN-GB'>% point above the threshold.</span><span lang=EN-GB
-
style='font-size:10.0pt;font-family:"Courier New";color:black;mso-ansi-language:
+
style='font-family:"Courier New";mso-bidi-font-family:"Times New Roman";
-
EN-GB'>21)=n;</span><span lang=EN-GB style='font-family:"Courier New";
+
mso-ansi-language:EN-GB'><o:p></o:p></span></p>
-
mso-bidi-font-family:"Times New Roman";mso-ansi-language:EN-GB'><o:p></o:p></span></p>
+
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
-
lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:black;
+
lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:forestgreen;
mso-ansi-language:EN-GB'><span style='mso-spacerun:yes'> </span></span><span
mso-ansi-language:EN-GB'><span style='mso-spacerun:yes'> </span></span><span
lang=EN-GB style='font-family:"Courier New";mso-bidi-font-family:"Times New Roman";
lang=EN-GB style='font-family:"Courier New";mso-bidi-font-family:"Times New Roman";
Line 466: Line 253:
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
-
class=GramE><span lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";
+
lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:forestgreen;
-
color:black;mso-ansi-language:EN-GB'>p(</span></span><span lang=EN-GB
+
-
style='font-size:10.0pt;font-family:"Courier New";color:black;mso-ansi-language:
+
-
EN-GB'>22)=33;</span><span lang=EN-GB style='font-family:"Courier New";
+
-
mso-bidi-font-family:"Times New Roman";mso-ansi-language:EN-GB'><o:p></o:p></span></p>
+
-
 
+
-
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
+
-
class=GramE><span lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";
+
-
color:black;mso-ansi-language:EN-GB'>p(</span></span><span lang=EN-GB
+
-
style='font-size:10.0pt;font-family:"Courier New";color:black;mso-ansi-language:
+
-
EN-GB'>23)=0;</span><span lang=EN-GB style='font-family:"Courier New";
+
-
mso-bidi-font-family:"Times New Roman";mso-ansi-language:EN-GB'><o:p></o:p></span></p>
+
-
 
+
-
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
+
-
class=GramE><span lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";
+
-
color:black;mso-ansi-language:EN-GB'>p(</span></span><span lang=EN-GB
+
-
style='font-size:10.0pt;font-family:"Courier New";color:black;mso-ansi-language:
+
-
EN-GB'>24)=n;</span><span lang=EN-GB style='font-family:"Courier New";
+
-
mso-bidi-font-family:"Times New Roman";mso-ansi-language:EN-GB'><o:p></o:p></span></p>
+
-
 
+
-
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
+
-
lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:black;
+
mso-ansi-language:EN-GB'><span style='mso-spacerun:yes'> </span></span><span
mso-ansi-language:EN-GB'><span style='mso-spacerun:yes'> </span></span><span
lang=EN-GB style='font-family:"Courier New";mso-bidi-font-family:"Times New Roman";
lang=EN-GB style='font-family:"Courier New";mso-bidi-font-family:"Times New Roman";
Line 494: Line 260:
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:black;
lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:black;
-
mso-ansi-language:EN-GB'><span style='mso-spacerun:yes'> </span></span><span
+
mso-ansi-language:EN-GB'>[c,i]=critere(V(:,3)); </span><span lang=EN-GB
 +
style='font-size:10.0pt;font-family:"Courier New";color:forestgreen;mso-ansi-language:
 +
EN-GB'>% Compute the criteria estimating the quality of the oscillations</span><span
lang=EN-GB style='font-family:"Courier New";mso-bidi-font-family:"Times New Roman";
lang=EN-GB style='font-family:"Courier New";mso-bidi-font-family:"Times New Roman";
mso-ansi-language:EN-GB'><o:p></o:p></span></p>
mso-ansi-language:EN-GB'><o:p></o:p></span></p>
-
 
-
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
 
-
lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:forestgreen;
 
-
mso-ansi-language:EN-GB'>%% ODE</span><span lang=EN-GB style='font-family:"Courier New";
 
-
mso-bidi-font-family:"Times New Roman";mso-ansi-language:EN-GB'><o:p></o:p></span></p>
 
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
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<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
-
lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:black;
+
lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:forestgreen;
-
mso-ansi-language:EN-GB'>dx(1)=k(1)*(1-Hill(x(5),k(3),1,k(5)))-k(2)*x(1);</span><span
+
mso-ansi-language:EN-GB'>% Visualization of the output</span><span lang=EN-GB
-
lang=EN-GB style='font-family:"Courier New";mso-bidi-font-family:"Times New Roman";
+
style='font-family:"Courier New";mso-bidi-font-family:"Times New Roman";
mso-ansi-language:EN-GB'><o:p></o:p></span></p>
mso-ansi-language:EN-GB'><o:p></o:p></span></p>
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:black;
lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:black;
-
mso-ansi-language:EN-GB'>dx(2)=Hill(x(1),p(1),p(2),p(3))+
+
mso-ansi-language:EN-GB'>figure;</span><span lang=EN-GB style='font-family:
-
Hill(x(2),p(22),p(23),p(24))-k(2)*x(2);</span><span lang=EN-GB
+
"Courier New";mso-bidi-font-family:"Times New Roman";mso-ansi-language:EN-GB'><o:p></o:p></span></p>
-
style='font-family:"Courier New";mso-bidi-font-family:"Times New Roman";
+
-
mso-ansi-language:EN-GB'><o:p></o:p></span></p>
+
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:black;
lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:black;
-
mso-ansi-language:EN-GB'>dx(3)=Hill(x(1),p(4),p(5),p(6))+
+
mso-ansi-language:EN-GB'>plot(t,V');</span><span lang=EN-GB style='font-family:
-
Hill(x(2),p(7),p(8),p(9))-k(2)*x(3);</span><span lang=EN-GB style='font-family:
+
"Courier New";mso-bidi-font-family:"Times New Roman";mso-ansi-language:EN-GB'><o:p></o:p></span></p>
"Courier New";mso-bidi-font-family:"Times New Roman";mso-ansi-language:EN-GB'><o:p></o:p></span></p>
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:black;
lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:black;
-
mso-ansi-language:EN-GB'>dx(4)=Hill(x(1),p(10),p(11),p(12))+
+
mso-ansi-language:EN-GB'>legend(</span><span lang=EN-GB style='font-size:10.0pt;
-
Hill(x(2),p(13),p(14),p(15))-k(2)*x(4);</span><span lang=EN-GB
+
font-family:"Courier New";color:#A020F0;mso-ansi-language:EN-GB'>'FlhDC'</span><span
-
style='font-family:"Courier New";mso-bidi-font-family:"Times New Roman";
+
lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:black;
-
mso-ansi-language:EN-GB'><o:p></o:p></span></p>
+
mso-ansi-language:EN-GB'>,</span><span lang=EN-GB style='font-size:10.0pt;
 +
font-family:"Courier New";color:#A020F0;mso-ansi-language:EN-GB'>'FliA'</span><span
 +
lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:black;
 +
mso-ansi-language:EN-GB'>,</span><span lang=EN-GB style='font-size:10.0pt;
 +
font-family:"Courier New";color:#A020F0;mso-ansi-language:EN-GB'>'GFP'</span><span
 +
lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:black;
 +
mso-ansi-language:EN-GB'>,</span><span lang=EN-GB style='font-size:10.0pt;
 +
font-family:"Courier New";color:#A020F0;mso-ansi-language:EN-GB'>'RFP'</span><span
 +
lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:black;
 +
mso-ansi-language:EN-GB'>,</span><span lang=EN-GB style='font-size:10.0pt;
 +
font-family:"Courier New";color:#A020F0;mso-ansi-language:EN-GB'>'CFP'</span><span
 +
lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:black;
 +
mso-ansi-language:EN-GB'>);</span><span lang=EN-GB style='font-family:"Courier New";
 +
mso-bidi-font-family:"Times New Roman";mso-ansi-language:EN-GB'><o:p></o:p></span></p>
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
-
lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:black;
+
class=GramE><span style='font-size:10.0pt;font-family:"Courier New";color:black'>xlabel(</span></span><span
-
mso-ansi-language:EN-GB'>dx(5)=Hill(x(1),p(16),p(17),p(18))+
+
style='font-size:10.0pt;font-family:"Courier New";color:#A020F0'>'Time'</span><span
-
Hill(x(2),p(19),p(20),p(21))-k(2)*x(5);</span><span lang=EN-GB
+
style='font-size:10.0pt;font-family:"Courier New";color:black'>);</span><span
-
style='font-family:"Courier New";mso-bidi-font-family:"Times New Roman";
+
style='font-family:"Courier New";mso-bidi-font-family:"Times New Roman"'><o:p></o:p></span></p>
-
mso-ansi-language:EN-GB'><o:p></o:p></span></p>
+
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
-
style='font-size:10.0pt;font-family:"Courier New";color:black'>dx=<span
+
class=GramE><span style='font-size:10.0pt;font-family:"Courier New";color:black'>ylabel(</span></span><span
-
class=GramE>dx(</span>:);</span><span style='font-family:"Courier New";
+
style='font-size:10.0pt;font-family:"Courier New";color:#A020F0'>'Concentrations'</span><span
-
mso-bidi-font-family:"Times New Roman"'><o:p></o:p></span></p>
+
style='font-size:10.0pt;font-family:"Courier New";color:black'>)</span><span
 +
style='font-family:"Courier New";mso-bidi-font-family:"Times New Roman"'><o:p></o:p></span></p>
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
-
style='font-size:10.0pt;font-family:"Courier New";color:black'><span
+
style='font-size:10.0pt;font-family:"Courier New";color:black'>Z1=<span
-
style='mso-spacerun:yes'> </span></span><span style='font-family:"Courier New";
+
class=GramE>V(</span>:,3);</span><span style='font-family:"Courier New";
mso-bidi-font-family:"Times New Roman"'><o:p></o:p></span></p>
mso-bidi-font-family:"Times New Roman"'><o:p></o:p></span></p>
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</html>
</html>
 +
|}<br style="clear:both" />

Latest revision as of 16:17, 1 August 2008

To go back to the previous page : First Parameters Obtained


function dx = modele(t,x,alpha,beta)

% Main function for the simulations

%% File to use to obtain :

% 1 - The ouput of the system

% 2 - A visualization of that output

% 3 - The value of a criteria describing whether there are oscillations

tmax=200;

t=[0:0.1:tmax];

Prop=0.3;

V0=[10;0;0;0;0];

V=simul(t,V0,40,20);

% This paragraph was useful to describe the FIFO process but has to be

% modified in order to take into account the appearing oscillations.

%

% Max=V(end,:); Find the final value, in case of 'no oscillations signals'

% Max2=max(V); Find the maximum

% Seuil=Prop*Max; Define a threshold

%

% tempsSeuil=tSeuil(V,Seuil,t); Find the time corresponding to the first

% point above the threshold.

[c,i]=critere(V(:,3)); % Compute the criteria estimating the quality of the oscillations

% Visualization of the output

figure;

plot(t,V');

legend('FlhDC','FliA','GFP','RFP','CFP');

xlabel('Time');

ylabel('Concentrations')

Z1=V(:,3);