Team:Paris/Modeling/Bibliography

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(Difference between revisions)
(→flhDC + fliA → pflgB → Z2 → ∅)
(→flhDC + fliA → pflhB → Z3 → ∅)
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== <FONT size=5> flhDC + fliA &rarr; pflhB &rarr; Z3 &rarr; &empty; </FONT> <BR> ==
== <FONT size=5> flhDC + fliA &rarr; pflhB &rarr; Z3 &rarr; &empty; </FONT> <BR> ==
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is the contribution of flhDC and fliA on pflhB a SUM gate
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[[Team:Paris/Modeling/Bibliography#flhDC_.2B_fliA_.E2.86.92_pfliL_.E2.86.92_Z1_.E2.86.92_.E2.88.85|(see fliL)]] ?
== <FONT size=5> lasI &rarr; 3OC12HSL &rarr; &empty;  </FONT> <BR> ==
== <FONT size=5> lasI &rarr; 3OC12HSL &rarr; &empty;  </FONT> <BR> ==

Revision as of 12:23, 23 July 2008

All the parameters we might have to introduce in our models

Diag expr time.jpg expression of the fl-genes observed in [1]

Contents

flhDC + fliA → pfliA → fliA → ∅

flhDC + fliA → pfliL → Z1 → ∅

the contributions of flhDC and fliA in the activity of pfliL appear to be a SUM [2] :

act_pfliL(flhDC,fliA) = act_pfliL(flhDC,0)+act_pfliL(0,fliA)


is it the same for the other promoters under the influence of both flhDC and fliA ?

flhDC + fliA → pflgA → Z2 → ∅

is the contribution of flhDC and fliA on pflgA a SUM gate (see fliL) ?

flhDC + fliA → pflgB → Z2 → ∅

is the contribution of flhDC and fliA on pflgB a SUM gate (see fliL) ?

flhDC + fliA → pflhB → Z3 → ∅

is the contribution of flhDC and fliA on pflhB a SUM gate (see fliL) ?

lasI → 3OC12HSL → ∅

d[HSL]/dt = -D * Grad²([HSL])

lasR → Rec → ∅

3OC12HSL + Rec → HSL-Rec → ∅

HSL-Rec + pRep → TetR → ∅

∅ → aTc → ∅

TetR + aTc → pTet → flhDC → ∅

OmpR* → pflhDC → flhDC → ∅

References

[1] Ordering Genes in a Flagella Pathway by Analysis of Expression Kinetics from Living Bacteria
S. Kalir, J. McClure, K. Pabbaraju, C. Southward, M. Ronen, S. Leibler, M. G. Surette, U. Alon, [2] Using a Quantitative Blueprint to Reprogram the Dynamics of the Flagella Gene Network
Shiraz Kalir and Uri Alon

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