"
Team:BCCS-Bristol/Modeling-Software
From 2008.igem.org
(Difference between revisions)
Tgorochowski (Talk | contribs) (→Transport) |
Tgorochowski (Talk | contribs) (→Reciever) |
||
| Line 50: | Line 50: | ||
=== Reciever === | === Reciever === | ||
| - | [http://2008sw.igem.org/bccs_bristol/src/GRN/reciever.m '''Reciever GRN'''] | + | [http://2008sw.igem.org/bccs_bristol/src/GRN/reciever.m '''Reciever GRN'''] - Models the concentrations of mRNA and proteins for the reciever part of the GRN. |
[http://2008sw.igem.org/bccs_bristol/src/GRN/compareRecieverInput.m '''Vary AHL concentration'''] - Shows levels of mCherry outputted by reciever when levels of AHL are varied. | [http://2008sw.igem.org/bccs_bristol/src/GRN/compareRecieverInput.m '''Vary AHL concentration'''] - Shows levels of mCherry outputted by reciever when levels of AHL are varied. | ||
Revision as of 12:25, 29 October 2008
BSim
Pre-Compiled Versions
BSim.jar (Compiled on Mac OS X 10.5.5 (Intel) using Java 1.5.0_16)
Source Code
BSim Source Code (zip file)
User Guide
Acknowledgements
- Werner Randelshofer (http://www.randelshofer.ch) - QuickTimeExportStream class
- David J. Eisenberg (david@catcode.com) - PNGEncoder.java class
GRN Matlab Scripts
Sender
Sender GRN - Models the concentrations of mRNA and proteins for the sender part of the GRN.
Vary CpxR concentration - Shows levels of AHL outputted by sender when CpMax is varied.
Transport
Transport - Analyses how the concentration of a given chemical varies over time due to a diffusion process.
Reciever
Reciever GRN - Models the concentrations of mRNA and proteins for the reciever part of the GRN.
Vary AHL concentration - Shows levels of mCherry outputted by reciever when levels of AHL are varied.
