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Team:BCCS-Bristol/Modeling-Software
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=== Acknowledgements === | === Acknowledgements === | ||
| + | We would like to acknowledge the use of several export libraries provided by the following people. | ||
| - | * '''Werner Randelshofer''' ([http://www.randelshofer.ch http://www.randelshofer.ch]) - QuickTimeExportStream class | + | * '''Werner Randelshofer''' ([http://www.randelshofer.ch http://www.randelshofer.ch]) - QuickTimeExportStream class which allows for movies to be written to a file. |
| - | * '''David J. Eisenberg''' (david@catcode.com) - PNGEncoder.java class | + | * '''David J. Eisenberg''' (david@catcode.com) - PNGEncoder.java class that allows for a graphic context to be written to a file. |
== GRN Matlab Scripts == | == GRN Matlab Scripts == | ||
Revision as of 12:26, 29 October 2008
BSim
Pre-Compiled Versions
BSim.jar (Compiled on Mac OS X 10.5.5 (Intel) using Java 1.5.0_16)
Source Code
BSim Source Code (zip file)
User Guide
Acknowledgements
We would like to acknowledge the use of several export libraries provided by the following people.
- Werner Randelshofer (http://www.randelshofer.ch) - QuickTimeExportStream class which allows for movies to be written to a file.
- David J. Eisenberg (david@catcode.com) - PNGEncoder.java class that allows for a graphic context to be written to a file.
GRN Matlab Scripts
Sender
Sender GRN - Models the concentrations of mRNA and proteins for the sender part of the GRN.
Vary CpxR concentration - Shows levels of AHL outputted by sender when CpMax is varied.
Transport
Transport - Analyses how the concentration of a given chemical varies over time due to a diffusion process.
Reciever
Reciever GRN - Models the concentrations of mRNA and proteins for the reciever part of the GRN.
Vary AHL concentration - Shows levels of mCherry outputted by reciever when levels of AHL are varied.
