Team:BCCS-Bristol/Modeling-Software

From 2008.igem.org

Revision as of 12:25, 29 October 2008 by Tgorochowski (Talk | contribs)

Home The Team The Project Submitted Parts Modelling Wet Lab Calendar Miscellaneous



BSim

Pre-Compiled Versions

BSim.jar (Compiled on Mac OS X 10.5.5 (Intel) using Java 1.5.0_16)

Source Code

BSim Source Code (zip file)

User Guide

BSim User Guide

Acknowledgements

  • Werner Randelshofer (http://www.randelshofer.ch) - QuickTimeExportStream class
  • David J. Eisenberg (david@catcode.com) - PNGEncoder.java class

GRN Matlab Scripts

Sender

Sender GRN - Models the concentrations of mRNA and proteins for the sender part of the GRN.

Vary CpxR concentration - Shows levels of AHL outputted by sender when CpMax is varied.

Transport

Transport - Analyses how the concentration of a given chemical varies over time due to a diffusion process.

Reciever

Reciever GRN - Models the concentrations of mRNA and proteins for the reciever part of the GRN.

Vary AHL concentration - Shows levels of mCherry outputted by reciever when levels of AHL are varied.


Retrieved from "http://2008.igem.org/Team:BCCS-Bristol/Modeling-Software"