Team:Freiburg Transfection

From 2008.igem.org

(Difference between revisions)
 
(38 intermediate revisions not shown)
Line 2: Line 2:
Content=
Content=
<div style="font-size:18pt;">
<div style="font-size:18pt;">
-
<font face="Arial Rounded MT Bold" style="color:#010369">_Transfection</font></div>
+
<font face="Arial Rounded MT Bold" style="color:#010369">_transfection and synthetic receptor activation  </font></div>
 +
<br><br>
 +
==Introduction==
 +
==Methods==
 +
<h4>'''Transfection of 293T cells'''</h4><br>
 +
One day before transfection cells were counted in the Neubauer chamber and 6*10^4 cells/cm² were seeded in 6 well plates. Approximately 1 hour before transfection cells were washed with 1xPBS and fresh DMEM medium was added. For transfection 2µg of DNA were mixed with 25µl CaCl2 and ddH2O was filled up to 250µl. After an incubation on ice for 20 min 250µl BBS (2x) were added. This mixture was given to the cells and after 4-12 hours cells were washed and fresh medium was added.<br>
<br>
<br>
 +
<h4>'''ONPG Test'''</h4><br>
 +
Transfection was performed with a lac z gene using the transfection protocol described above. After 48h one part of the cells was harvested by washing them in PBS and scraping them off. Then the cells were centrifuged at 13000rpm for 2 min and the PBS was replaced by 500µl lysisbuffer (1x). Incubation took place at -80°C for 20min. After thawing the solution was vortexed, spun down and the supernatant was frozen at -20°C. The same procedure was done with the rest of the cells one day later (68h). Then 20µl of each lysate was given to 130µl reactionbuffer (incl. ONPG) letting the mixture incubate for 1h at 37°C. Measurement was done using the ELISA-reader at 405nm.<br>
<br>
<br>
-
'''1) Localization at the cell membrane'''<br>
+
==Results==
 +
<h4>'''Testing the transfection protocol'''</h4>
 +
In order to check if the transfection protocol (Ca2+ precipitation) is suitable to transfect 293T cells a 'test'transfection with a lac z gene (Test-vector from Katja Arndt's lab) was done and the β-galactosidase was detected with an ONPG test.<br>
 +
<br>
 +
ONPG-assay: <br>
 +
<br>[[Image:FreiGEMTable3onpg.JPG]]<br>
 +
''Table 1_Transfection: Absorbance of o-Nitrophenol produced by the β-galactosidase''<br>
 +
[[Image:Graph2onpg.JPG‎]]<br>
 +
''Graph 1_Transfection: Absorbance of o-Nitrophenol produced by the β-galactosidase (Control was done with untransfected cells using the same procedure)''<br>
 +
Due to the results of the ONPG assay the Ca2+ precipitation proofed to be a very simple and effective method to transfect 293T cells.<br>
 +
<br>
 +
<h3>'''Testing the transfectionvector-CMV promoter construct (BBa_K157040)'''</h3>
 +
To test the functionality of the transfectionvector and the CMV-promoter, YFP was cloned behind the promoter resulting in plasmid BBa_K157040 and was brought into 293T cells. The detection of YFP took place 1 day later under a microscope with YFP filter.<br>
 +
The transfected cells show fluorescence  by excitation of 510-520nm while the untransfected remain dark at this wavelength <br>
 +
<br>
 +
[[Image:Freiburg2008_150%_293Tzvi.jpg]]  [[Image:Freiburg2008_Kontrolle.jpg]]  [[Image:Freiburg2008_Kontrolle_Durchlicht.jpg]]<br>
 +
''Figure 1_Transfection: transfected 293T cells (left), untransfected cells (middle) and untransfected cells transmitted light (right)''<br>
 +
<br>
 +
<h3>'''Localization at the cell membrane'''</h3>
To show the localization of the constructs at the cell membrane transfection of the construct signalpeptide-Lipocalin-transmembraneregion-betaLactamase1-YFP was performed.<br>
To show the localization of the constructs at the cell membrane transfection of the construct signalpeptide-Lipocalin-transmembraneregion-betaLactamase1-YFP was performed.<br>
-
Figure 1_Transfection shows the configuration of the construct. Lipocalin, the fluorescein binding Anticalin, exhibits the extracellular part of the construct. The transmembrane region is appropriate to that of the EGF-receptor erbb1. Split-beta-Lactamase, the intracellular part is labeled to the yellow fluorescent protein to detect membrane localization.<br>
+
Figure 2_Transfection shows the model of the protein structure based on PDB files. Anti-Fluorescein Anticalin (Part BBa_K157004) is the extracellular part of the construct. The transmembrane region is identical to that of the EGF-receptor erbb1 (Part BBa_K157002). Split-beta-Lactamase, the intracellular part is labeled to the yellow fluorescent protein to detect membrane localization.<br>
<br>
<br>
[[Image:Freiburg2008_Lipo_bla1+YFP.jpg|500px]]
[[Image:Freiburg2008_Lipo_bla1+YFP.jpg|500px]]
<br>
<br>
-
'''Figure 1_Transfection'''
+
'''Figure 2_Transfection: Structure of the signalpeptide-Lipocalin-transmembraneregion-betaLactamase1-YFP construct. Extracellular: Lipocalin, GGGSlinker; Transmembrane: transmembraneregion of the EGF-receptor; Intracellular: Split-beta-Lactamase1, YFP.'''<br>
<br>
<br>
-
<br>
+
Membranelocalization of the construct signalpeptide-Lipocalin-transmembraneregion-betaLactamase1-YFP is visible in transfected 293T cells (Figure 3_Transfection). The fluorescence of the cells is most likely restricted to the cellmembrane as evident by the strong signal at the surface of the cell spheres confirming the assembly of the construct in the cytoplasmamembrane.<br>
-
Membranelocalization of the construct signalpeptide-Lipocalin-transmembraneregion-betaLactamase1-YFP is visible in transfected 293T cells (Figure 2_Transfection). The fluorescence of the cells is most likely restricted to the cellmembrane which confirms the assembly of the construct in the cytoplasmamembrane.<br>
+
In comparison, 293T cells transfected with the construct transfectionvector-CMV-YFP show a uniformly distributed fluorescence all-over the cell (Figure 4_Transfection A and B).<br>
-
In comparison, 293T cells transfected with the construct transfectionvector-YFP show a uniformly distributed fluorescence all-over the cell (Figure 3_Tansfection A and B).<br>
+
Transfection with the construct transfectionvector-CMV-CFP, i.e. without membrane targeting as well results in completely fluorescent cells (Figure 4_Transfection C and D).<br>  
-
Transfection with the construct transfectionvector-CFP as well results in completely fluorescent cells (Figure 3_Transfection C and D).<br>  
+
<br>   
<br>   
[[Image:Freiburg2008_SP_LIPO_GGGS_TM_bla1_YFP_1.jpg|710px]]<br>
[[Image:Freiburg2008_SP_LIPO_GGGS_TM_bla1_YFP_1.jpg|710px]]<br>
-
'''Figure 2_Transfection'''<br>
+
'''Figure 3_Transfection: 293T cells transfected with signalpeptide-Lipocalin-transmembraneregion-betaLactamase1-YFP.'''<br>
<br>
<br>
[[Image:Freiburg2008_TV_CMV_YFP___CFP_loeslich.jpg|700px]]<br>
[[Image:Freiburg2008_TV_CMV_YFP___CFP_loeslich.jpg|700px]]<br>
-
'''Figure 3_Transfection'''<br>
+
'''Figure 4_Transfection: 293T cells transfected with transfectionvector-CMV-YFP (A and B); 293T cells transfected with transfectionvector-CMV-CFP (C and D)'''<br>
<br>
<br>
 +
<h3>'''Double transfections with Splitfluorophor-/Splitenzyme-constructs'''</h3>
 +
On Figure 5_Transfection the structures of the signalpeptide-Lipocalin-transmembraneregion-nCFP and signalpeptide-Lipocalin-transmembraneregion-fluolinker-cCFP constructs are visible (exemplary for the Splitfluorophore-/Splitenzyme-constructs). The extracellular fragment is build of Lipocalin (fluorescein binding Anticalin) and a GGGSLinker.  Intracellular either the N-terminal part or the C-terminal part of the splitfluorophore is fused to the transmembrane region of the EGF-receptor. To achieve more flexibility and to support the assembly of the two splitfluorophore parts a fluolinker is fused in between the transmembrane region and the C-terminal part of the splitfluorophores.<br>
<br>
<br>
-
'''2) Double transfections with Splitfluorophor-/Splitenzyme-constructs'''
 
-
On Figure 4_Transfection the structures of the signalpeptide-Lipocalin-transmembraneregion-fluolinker-cCFP and signalpeptide-Lipocalin-transmembraneregion-nCFP are visible (exemplary for the Splitfluorophore-/Splitenzyme-constructs).
 
-
 
[[Image:Freiburg2008_Lipo+Split_CFP.jpg|450px]]<br>
[[Image:Freiburg2008_Lipo+Split_CFP.jpg|450px]]<br>
-
'''Figure 4_Transfection'''<br>
+
'''Figure 5_Transfection: structures of the signalpeptide-Lipocalin-transmembraneregion-nCFP and signalpeptide-Lipocalin-transmembraneregion-fluolinker-cCFP constructs'''<br>
-
[[Image:Freiburg2008_Lipo+Split_YFP.jpg|450px]]<br>
+
-
'''Figure 5_Transfection'''<br>
+
<br>
<br>
 +
<h4>'''Outlook'''</h4>
 +
We hypothesize that adding fluorescein-coupled molecules leads to a clustering of the Lipocalin constructs due to the fluorescein-Lipocalin-binding.
 +
The clustering of the constructs in turn results in an assembly of the splitfluorophores or splitenzymes and therefore creates a functional protein (Figure 6_Transfection).<br>
<br>
<br>
-
 
+
[[Image:Freiburg2008_Lipo+Split_YFP.jpg|450px]]<br>
-
'''METHODS''' <br>
+
'''Figure 6_Transfection: clustering and assembly of the signalpeptide-Lipocalin-transmembraneregion-nYFP and signalpeptide-Lipocalin-transmembraneregion-fluolinker-cYFP constructs'''<br>
-
_________________________________________________________________________________________________________________<br><br>
+
-
'''Transfection of 293T cells'''<br>
+
-
One day before transfection cells were counted in the Neubauer chamber and 6*10^4 cells/cm² were seeded in 6 well plates. Approximately 1 hour before transfection cells were washed with 1xPBS and fresh DMEM medium was added. For transfection 2µg of DNA were mixed with 25µl CaCl2 and ddH2O was filled up to 250µl. After an incubation on ice for 20 min 250µl BBS (2x) were added. This mixture was given to the cells and after 4-12 hours cells were washed and fresh medium was added.
+
-
 
+

Latest revision as of 14:30, 29 October 2008


Freiburg2008 small header.gif



Home

The Team

Project Report

Parts

Modeling

Notebook

Safety

CoLABoration

_transfection and synthetic receptor activation



Contents

Introduction

Methods

Transfection of 293T cells


One day before transfection cells were counted in the Neubauer chamber and 6*10^4 cells/cm² were seeded in 6 well plates. Approximately 1 hour before transfection cells were washed with 1xPBS and fresh DMEM medium was added. For transfection 2µg of DNA were mixed with 25µl CaCl2 and ddH2O was filled up to 250µl. After an incubation on ice for 20 min 250µl BBS (2x) were added. This mixture was given to the cells and after 4-12 hours cells were washed and fresh medium was added.

ONPG Test


Transfection was performed with a lac z gene using the transfection protocol described above. After 48h one part of the cells was harvested by washing them in PBS and scraping them off. Then the cells were centrifuged at 13000rpm for 2 min and the PBS was replaced by 500µl lysisbuffer (1x). Incubation took place at -80°C for 20min. After thawing the solution was vortexed, spun down and the supernatant was frozen at -20°C. The same procedure was done with the rest of the cells one day later (68h). Then 20µl of each lysate was given to 130µl reactionbuffer (incl. ONPG) letting the mixture incubate for 1h at 37°C. Measurement was done using the ELISA-reader at 405nm.

Results

Testing the transfection protocol

In order to check if the transfection protocol (Ca2+ precipitation) is suitable to transfect 293T cells a 'test'transfection with a lac z gene (Test-vector from Katja Arndt's lab) was done and the β-galactosidase was detected with an ONPG test.

ONPG-assay:

FreiGEMTable3onpg.JPG
Table 1_Transfection: Absorbance of o-Nitrophenol produced by the β-galactosidase
Graph2onpg.JPG
Graph 1_Transfection: Absorbance of o-Nitrophenol produced by the β-galactosidase (Control was done with untransfected cells using the same procedure)
Due to the results of the ONPG assay the Ca2+ precipitation proofed to be a very simple and effective method to transfect 293T cells.

Testing the transfectionvector-CMV promoter construct (BBa_K157040)

To test the functionality of the transfectionvector and the CMV-promoter, YFP was cloned behind the promoter resulting in plasmid BBa_K157040 and was brought into 293T cells. The detection of YFP took place 1 day later under a microscope with YFP filter.
The transfected cells show fluorescence by excitation of 510-520nm while the untransfected remain dark at this wavelength

Freiburg2008 150% 293Tzvi.jpg Freiburg2008 Kontrolle.jpg Freiburg2008 Kontrolle Durchlicht.jpg
Figure 1_Transfection: transfected 293T cells (left), untransfected cells (middle) and untransfected cells transmitted light (right)

Localization at the cell membrane

To show the localization of the constructs at the cell membrane transfection of the construct signalpeptide-Lipocalin-transmembraneregion-betaLactamase1-YFP was performed.
Figure 2_Transfection shows the model of the protein structure based on PDB files. Anti-Fluorescein Anticalin (Part BBa_K157004) is the extracellular part of the construct. The transmembrane region is identical to that of the EGF-receptor erbb1 (Part BBa_K157002). Split-beta-Lactamase, the intracellular part is labeled to the yellow fluorescent protein to detect membrane localization.

Freiburg2008 Lipo bla1+YFP.jpg
Figure 2_Transfection: Structure of the signalpeptide-Lipocalin-transmembraneregion-betaLactamase1-YFP construct. Extracellular: Lipocalin, GGGSlinker; Transmembrane: transmembraneregion of the EGF-receptor; Intracellular: Split-beta-Lactamase1, YFP.

Membranelocalization of the construct signalpeptide-Lipocalin-transmembraneregion-betaLactamase1-YFP is visible in transfected 293T cells (Figure 3_Transfection). The fluorescence of the cells is most likely restricted to the cellmembrane as evident by the strong signal at the surface of the cell spheres confirming the assembly of the construct in the cytoplasmamembrane.
In comparison, 293T cells transfected with the construct transfectionvector-CMV-YFP show a uniformly distributed fluorescence all-over the cell (Figure 4_Transfection A and B).
Transfection with the construct transfectionvector-CMV-CFP, i.e. without membrane targeting as well results in completely fluorescent cells (Figure 4_Transfection C and D).

Freiburg2008 SP LIPO GGGS TM bla1 YFP 1.jpg
Figure 3_Transfection: 293T cells transfected with signalpeptide-Lipocalin-transmembraneregion-betaLactamase1-YFP.

Freiburg2008 TV CMV YFP CFP loeslich.jpg
Figure 4_Transfection: 293T cells transfected with transfectionvector-CMV-YFP (A and B); 293T cells transfected with transfectionvector-CMV-CFP (C and D)

Double transfections with Splitfluorophor-/Splitenzyme-constructs

On Figure 5_Transfection the structures of the signalpeptide-Lipocalin-transmembraneregion-nCFP and signalpeptide-Lipocalin-transmembraneregion-fluolinker-cCFP constructs are visible (exemplary for the Splitfluorophore-/Splitenzyme-constructs). The extracellular fragment is build of Lipocalin (fluorescein binding Anticalin) and a GGGSLinker. Intracellular either the N-terminal part or the C-terminal part of the splitfluorophore is fused to the transmembrane region of the EGF-receptor. To achieve more flexibility and to support the assembly of the two splitfluorophore parts a fluolinker is fused in between the transmembrane region and the C-terminal part of the splitfluorophores.

Freiburg2008 Lipo+Split CFP.jpg
Figure 5_Transfection: structures of the signalpeptide-Lipocalin-transmembraneregion-nCFP and signalpeptide-Lipocalin-transmembraneregion-fluolinker-cCFP constructs

Outlook

We hypothesize that adding fluorescein-coupled molecules leads to a clustering of the Lipocalin constructs due to the fluorescein-Lipocalin-binding. The clustering of the constructs in turn results in an assembly of the splitfluorophores or splitenzymes and therefore creates a functional protein (Figure 6_Transfection).

Freiburg2008 Lipo+Split YFP.jpg
Figure 6_Transfection: clustering and assembly of the signalpeptide-Lipocalin-transmembraneregion-nYFP and signalpeptide-Lipocalin-transmembraneregion-fluolinker-cYFP constructs

Freiburg08 FT3.png