Team:The University of Alberta/Project

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<span class="plainlinks">[{{SERVER}}{{localurl:Team:The_University_of_Alberta}} https://static.igem.org/mediawiki/2008/9/9a/Home.png]</span>
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<span class="plainlinks">[{{SERVER}}{{localurl:Team:The_University_of_Alberta/Team}} https://static.igem.org/mediawiki/2008/2/2a/Team1.png]</span>
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<span class="plainlinks">[{{SERVER}}{{localurl:Team:The_University_of_Alberta/Modeling}} https://static.igem.org/mediawiki/2008/3/3c/Modeling.png]</span>
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<span class="plainlinks">[{{SERVER}}{{localurl:Team:The_University_of_Alberta/Notebook}} https://static.igem.org/mediawiki/2008/9/95/Notebook.png]</span><br>
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'''Click a Button to see info on that Project!'''<br>
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a.menu {
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<span class="plainlinks">[{{SERVER}}{{localurl:Plant_Project:The_University_of_Alberta}} https://static.igem.org/mediawiki/2008/4/47/Plantbutton.jpg]</span>
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<span class="plainlinks">[{{SERVER}}{{localurl:Plastic_Project:The_University_of_Alberta}} https://static.igem.org/mediawiki/2008/9/97/Plasticbutton.jpg]</span>
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<span class="plainlinks">[{{SERVER}}{{localurl:Team:The_University_of_Alberta/Butanerd}} https://static.igem.org/mediawiki/2008/2/24/Butanerd_button.jpg]</span>
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==Journals==
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===Synthetic Receptors===
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<li>'''An estrogen receptor-based transactivator XVE mediates highly inducible gene expression in transgenic plants''' Jianru Zuo, Wi-Wen Niu and Nam-Hai Chua <br>
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[http://www.blackwell-synergy.com/doi/full/10.1046/j.1365-313x.2000.00868.x?prevSearch=allfield%3A%28chua%29| Link]<br>
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===Protein Complementation===
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<li>'''A ToxR-based two-hybrid system for the detection of periplasmic and cytoplasmic protein–protein interactions in Escherichia coli: minimal requirements for specific DNA binding and transcriptional activation ''' Frank Hennecke, Arne Müller, Roland Meister, Astrid Strelowand Susanne Behrens1,6<br>
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[http://peds.oxfordjournals.org/cgi/content/full/18/10/477| Link]<br>
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<li>'''A -Galactosidase-Based Bacterial Two-Hybrid System To Assess Protein-Protein Interactions in the Correct Cellular Environment''' Jimmy Borloo, Lina De Smet, Bjorn Vergauwen, Jozef J. Van Beeumen, and Bart Devreese <br>
 
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[http://pubs.acs.org/cgi-bin/abstract.cgi/jprobs/2007/6/i07/abs/pr070037j.html| Link]<br>
 
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===Estrogen Receptors===
 
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<li>'''Estrogen response element-dependent regulation of transcriptional activation of estrogen receptors  and ß by coactivators and corepressors''' C M Klinge, S C Jernigan, K A Mattingly, K E Risinger and J Zhang <br>[http://jme.endocrinology-journals.org/cgi/content/full/33/2/387| Link]<br>
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<span class="plainlinks">[{{SERVER}}{{localurl:Team:The_University_of_Alberta}} https://static.igem.org/mediawiki/2008/a/af/HOMEUAB.png]</span>
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<span class="plainlinks">[{{SERVER}}{{localurl:Team:The_University_of_Alberta/Team}} https://static.igem.org/mediawiki/2008/7/7c/TEAMUA.png]</span>
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<span class="plainlinks">[{{SERVER}}{{localurl:Team:The_University_of_Alberta/Project}} https://static.igem.org/mediawiki/2008/7/7e/PROJECTUA.png]</span>
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<span class="plainlinks">[{{SERVER}}{{localurl:Team:The_University_of_Alberta/Parts}} https://static.igem.org/mediawiki/2008/c/c0/PARTSUA.png]</span>
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<span class="plainlinks">[{{SERVER}}{{localurl:Team:The_University_of_Alberta/Notebook}} https://static.igem.org/mediawiki/2008/f/f9/NOTEBOOKUA.png]</span>
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<li>'''Cooperative Coactivation of Estrogen Receptor  in ZR-75 Human Breast Cancer Cells by SNURF and TATA-binding Protein''' Bradley Saville, Hetti Poukka, Mark Wormke, Olli A. Jänne, Jorma J. Palvimo, Matthew Stoner¶, Ismael Samudio, and Stephen Safe <br>[http://www.jbc.org/cgi/content/full/277/4/2485| Link]<br>
 
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<li>'''Identification of a Novel RING Finger Protein as a Coregulator in Steroid Receptor-Mediated Gene Transcription''' Anu-Maarit Moilanen, Hetti Poukka, Ulla Karvonen, Marika Häkli, Olli A. Jänne, and Jorma J. Palvimo<br> [http://mcb.asm.org/cgi/content/full/18/9/5128| Link]<br>
 
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<li>'''High level expression of full-length estrogen receptor in Escherichia coli is facilitated by the uncoupler of oxidative phosphorylation, CCCP ''' Zhang C.C.; Glenn K.A.; Kuntz M.A.; Shapiro D.J.1<br>
 
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[http://www.ingentaconnect.com/content/els/09600760/2000/00000074/00000004/art00120;jsessionid=22tnudxvlkl5k.alice?format=print| Link]<br>
 
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<li>'''Nuclear receptor coactivators function in estrogen receptor- and progestin receptor-dependent aspects of sexual behavior in female mice''' Heather A. Molenda-Figueiraa, Casey A. Williamsa, Andreana L. Griffina, Eric M. Rutledgeb, Jeffrey D. Blausteina and Marc J. Tetela <br>
 
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[http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6WGC-4K5HWP0-2&_user=1067472&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_acct=C000051251&_version=1&_urlVersion=0&_userid=1067472&md5=e1dd22c068b2b8288136f34eab6b6514| Link]<br>
 
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<li>'''Estrogen receptor interaction with estrogen response elements '''Carolyn M. Klinge<br>[http://nar.oxfordjournals.org/cgi/content/full/29/14/2905#SEC2| Link]<br>
 
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<li> '''A novel estrogen sensor based on recombinant Arxula adeninivorans cells''': Thomas Hahna, Kristina Taga, Klaus Riedela, Steffen Uhligb, Keith Baronianc, Gerd Gellissend and Gotthard Kunzea <br>[http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6TFC-4J32JC8-1&_user=1067472&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_acct=C000051251&_version=1&_urlVersion=0&_userid=1067472&md5=2e20cf8bb0b465392aa852b10cda184b| Link]<br>
 
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<li>'''Estrogen receptor ß: an overview and update''': Chunyan Zhao, Karin Dahlman-Wright, and Jan-Åke Gustafsson<br>
 
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[http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=2254331 Link]
 
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<li>'''A simple and extremely sensitive system for detecting estrogenic activity using transgenic Arabidopsis thaliana'''<br>
 
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[http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6WDM-4G314HG-2&_user=1067472&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_acct=C000051251&_version=1&_urlVersion=0&_userid=1067472&md5=1b0120c5a09915ebdf83160641791af0| Link]
 
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<li>'''How estrogen-specific proteins discriminate estrogens from androgens: a common steroid binding site architecture'''<br>
 
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[http://www.fasebj.org/cgi/content/full/17/10/1334 Link]
 
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===Bisphenol A===
 
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<li> '''Direct Evidence Revealing Structural Elements Essential for the High Binding Ability of Bisphenol A to Human Estrogen-Related Receptor-γ''': Hiroyuki Okada, Takatoshi Tokunaga, Xiaohui Liu, Sayaka Takayanagi, Ayami Matsushima, and Yasuyuki Shimohigashi<br> [http://www.ehponline.org/members/2007/10587/10587.html| Link]<br>
 
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<li>'''Endocrine disruptor bisphenol A strongly binds to human estrogen-related receptor γ (ERRγ) with high constitutive activity''':Sayaka Takayanagia, Takatoshi Tokunagaa, Xiaohui Liua, Hiroyuki Okadaa, Ayami Matsushimaa and Yasuyuki Shimohigashi <br>
 
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[http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6TCR-4KT6GTR-3&_user=1067472&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_acct=C000051251&_version=1&_urlVersion=0&_userid=1067472&md5=f58023e52189a0ee9ef7fd6263dff43f| Link]<br>
 
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<li>'''Aerobic degradation of bisphenol A by Achromobacter xylosoxidans strain B-16 isolated from compost leachate of municipal solid waste''':Chang Zhanga, Guangming Zenga, Li Yuana, Jian Yub, Jianbing Lia, Guohe Huanga, Beidou Xie and Hongliang Liua.
 
<br>
<br>
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[http://www.sciencedirect.com.login.ezproxy.library.ualberta.ca/science?_ob=ArticleURL&_udi=B6V74-4N0XNBH-2&_user=1067472&_coverDate=05%2F31%2F2007&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_acct=C000051251&_version=1&_urlVersion=0&_userid=1067472&md5=60133aec998135b6157590f860fb5d3d| Link]
 
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<li>'''Molecular cloning and characterization of cytochrome P450 and ferredoxin genes involved in bisphenol A degradation in Sphingomonas bisphenolicum strain AO1''': M. Sasaki, T. Tsuchido and Y. Matsumura.
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'''<font color=silver>Click a Button to see info on that Project!</font>'''
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<br>[http://www.blackwell-synergy.com/doi/abs/10.1111/j.1365-2672.2008.03843.x Link]<br>
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<li>'''Processing of Bisphenol A by Plant Tissues: Glucosylation by Cultured BY-2 Cells and Glucosylation/Translocation by Plants of Nicotiana tabacum''': Nobuyoshi Nakajima1,4, Yukiko Ohshima2, Shigeko Serizawa2, Tomoko Kouda2, John S. Edmonds2, Fujio Shiraishi2, Mitsuko Aono3, Akihiro Kubo3, Masanori Tamaoki1, Hikaru Saji3 and Masatoshi Morita2.
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<br>[http://pcp.oxfordjournals.org/cgi/content/full/43/9/1036 Link]<br>
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<li>'''Purification of Cytochrome P450 and Ferredoxin, Involved in Bisphenonol A Degradation, from Sphingomonas sp. Strain AO1''': Miho Sasaki,Ayako Akahira, Ko-ichi Oshiman, Tetsuaki Tsuchido, and Yoshinobu Matsumura.
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<br> [http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=1317416 Link] <br>
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<li>'''Biodegradation of bisphenol A by cells and cell lysate from Sphingomonas sp. strain AO1''': Miho Sasaki1, Jun-ichi Maki1, Ko-ichi Oshiman3, Yoshinobu Matsumura1, 2  and Tetsuaki Tsuchido1, 2.
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<br>[http://www.springerlink.com/content/q7864l02734wg32m/fulltext.pdf Link] <br>
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<li>'''Bisphenol A Degradation by Bacteria Isolated from River Water''': J.-H. Kang and F. Kondo.
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<br>[http://www.springerlink.com/content/ge1mec9289r4cw3w/fulltext.pdf Link] <br>
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===Plant Info===
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<li>'''The Basic Helix–Loop–Helix Transcription Factor Family in Plants: A Genome-Wide Study of Protein Structure and Functional Diversity''':
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Marc A. Heim, Marc Jakoby, Martin Werber, Cathie Martin, Bernd Weisshaar, and Paul C. Bailey
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<Br>
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[http://mbe.oxfordjournals.org/cgi/content/full/20/5/735 Link]
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===Cell Free===
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<li>'''Biosensor immunoassays for the detection of bisphenol A''': Gerardo R. Marchesinia, b, c, , , Eline Meulenberga, Willem Haasnootb and Hubertus Irthc
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<br>[http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6TF4-4D04TNM-1&_user=1067472&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_acct=C000051251&_version=1&_urlVersion=0&_userid=1067472&md5=4aab2bf3161d728c5c3bd69a3c418800 Link]
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<li>'''Basis of a High-Throughput Method for Nuclear Receptor Ligands''': Tomohiko Kanayama, Satoru Mamiya, Tsutomu Nishihara and Jun-ichi Nishikawa J. Biochem. 133, 791–797 (2003)<br>[http://jb.oxfordjournals.org/cgi/reprint/133/6/791?maxtoshow=&HITS=10&hits=10&RESULTFORMAT=1&author1=kanayama&author2=nishikawa&andorexacttitle=and&andorexacttitleabs=and&andorexactfulltext=and&searchid=1&FIRSTINDEX=0&sortspec=relevance&resourcetype=HWCIT Link]<br>
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===Prokaryotic Expression===
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<li>'''High level expression of full-length estrogen receptor in
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Escherichia coli is facilitated by the uncoupler of oxidative
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phosphorylation, CCCP''':Cheng Cheng Zhang, Kevin A. Glenn 1, Martin A. Kuntz, David J. Shapiro. Journal of Steroid Biochemistry & Molecular Biology 74 (2000) 169–178 <br>
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[http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6T8X-4233BF2-2&_user=1067472&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_acct=C000051251&_version=1&_urlVersion=0&_userid=1067472&md5=d1f19b9d53d5416246025fdc1aeba8c0 Link]<br>
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===Other Info===
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<li>'''Natural Animal Coloration Can Be Determined by a Nonfluorescent Green Flourescent Protein Homolog''': Lukyanov K., Fradkov A., Gurskaya N., Matz M., Labas Y., Savitsky A., Markelov M., Zaraisky A., Zhao X., Fang Y., Tan W., and Lukyanov S.
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<br>
<br>
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[http://www.jbc.org/cgi/content/abstract/275/34/25879 Link]
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<span class="plainlinks">[{{SERVER}}{{localurl:Plant_Project:The_University_of_Alberta}} https://static.igem.org/mediawiki/2008/4/47/Plantbutton.jpg]</span>
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<span class="plainlinks">[{{SERVER}}{{localurl:Plastic_Project:The_University_of_Alberta}} https://static.igem.org/mediawiki/2008/9/97/Plasticbutton.jpg]</span>
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<span class="plainlinks">[{{SERVER}}{{localurl:Team:The_University_of_Alberta/Butanerd}} https://static.igem.org/mediawiki/2008/2/24/Butanerd_button.jpg]</span>
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<li>'''An impedimetric immunosensor for the label-free detection of bisphenol A''':Md. Aminur Rahmana, Muhammad J.A. Shiddikya, Jang-Su Park and Yoon-Bo Shim,
 
<br>
<br>
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[http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6TFC-4M3J0PC-4&_user=1067472&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_acct=C000051251&_version=1&_urlVersion=0&_userid=1067472&md5=88089d3f9567b0671e2606a2820fc0c6 Link]
 
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<li>'''Simultaneous Determination of 4-Nonylphenol and Bisphenol A in Sewage Sludge''':Roland J. W. Meesters and Horst Fr. Schröder*
 
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[http://pubs.acs.org/cgi-bin/article.cgi/ancham/2002/74/i14/html/ac011258q.html link]
 
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==Other documents==
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==<font color=gold>WELCOME</font>==
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==Sequencing Results==
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<font color=silver>Well here you are on our project page.  We have 3 projects.  Our major project is the Plastic project (Bisphenol Eh?), with two supplementary projects focused on an iGEM plant binary vector (Plant Project) and butanol synthesis (Butanerds).  Enjoy.
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Click [[Team:The_University_of_Alberta/Sequencing|here]] for sequences and chromatograms.
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Latest revision as of 22:06, 29 October 2008


HOMEUAB.png TEAMUA.png PROJECTUA.png PARTSUA.png NOTEBOOKUA.png


Click a Button to see info on that Project!
Plantbutton.jpg Plasticbutton.jpg Butanerd_button.jpg


WELCOME

Well here you are on our project page. We have 3 projects. Our major project is the Plastic project (Bisphenol Eh?), with two supplementary projects focused on an iGEM plant binary vector (Plant Project) and butanol synthesis (Butanerds). Enjoy.

Retrieved from "http://2008.igem.org/Team:The_University_of_Alberta/Project"