From 2008.igem.org
Newcastle University
GOLD MEDAL WINNER 2008
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| May
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| [http://2008.igem.org/Newcastle_University_Drylab/1_May_2008 1]
| [http://2008.igem.org/Newcastle_University_Drylab/2_May_2008 2]
| [http://2008.igem.org/Newcastle_University_Drylab/3_May_2008 3]
| [http://2008.igem.org/Newcastle_University_Drylab/4_May_2008 4]
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| [http://2008.igem.org/Newcastle_University_Drylab/5_May_2008 5]
| [http://2008.igem.org/Newcastle_University_Drylab/6_May_2008 6]
| [http://2008.igem.org/Newcastle_University_Drylab/7_May_2008 7]
| [http://2008.igem.org/Newcastle_University_Drylab/8_May_2008 8]
| [http://2008.igem.org/Newcastle_University_Drylab/9_May_2008 9]
| [http://2008.igem.org/Newcastle_University_Drylab/10_May_2008 10]
| [http://2008.igem.org/Newcastle_University_Drylab/11_May_2008 11]
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| [http://2008.igem.org/Newcastle_University_Drylab/12_May_2008 12]
| [http://2008.igem.org/Newcastle_University_Drylab/13_May_2008 13]
| [http://2008.igem.org/Newcastle_University_Drylab/14_May_2008 14]
| [http://2008.igem.org/Newcastle_University_Drylab/15_May_2008 15]
| [http://2008.igem.org/Newcastle_University_Drylab/16_May_2008 16]
| [http://2008.igem.org/Newcastle_University_Drylab/17_May_2008 17]
| [http://2008.igem.org/Newcastle_University_Drylab/18_May_2008 18]
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| [http://2008.igem.org/Newcastle_University_Drylab/19_May_2008 19]
| [http://2008.igem.org/Newcastle_University_Drylab/20_May_2008 20]
| [http://2008.igem.org/Newcastle_University_Drylab/21_May_2008 21]
| [http://2008.igem.org/Newcastle_University_Drylab/22_May_2008 22]
| [http://2008.igem.org/Newcastle_University_Drylab/23_May_2008 23]
| [http://2008.igem.org/Newcastle_University_Drylab/24_May_2008 24]
| [http://2008.igem.org/Newcastle_University_Drylab/25_May_2008 25]
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| [http://2008.igem.org/Newcastle_University_Drylab/26_May_2008 26]
| [http://2008.igem.org/Newcastle_University_Drylab/27_May_2008 27]
| [http://2008.igem.org/Newcastle_University_Drylab/28_May_2008 28]
| [http://2008.igem.org/Newcastle_University_Drylab/29_May_2008 29]
| [http://2008.igem.org/Newcastle_University_Drylab/30_May_2008 30]
| [http://2008.igem.org/Newcastle_University_Drylab/31_May_2008 31]
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| June
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| [http://2008.igem.org/Newcastle_University_Drylab/1_June_2008 1]
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| [http://2008.igem.org/Newcastle_University_Drylab/2_June_2008 2]
| [http://2008.igem.org/Newcastle_University_Drylab/3_June_2008 3]
| [http://2008.igem.org/Newcastle_University_Drylab/4_June_2008 4]
| [http://2008.igem.org/Newcastle_University_Drylab/5_June_2008 5]
| [http://2008.igem.org/Newcastle_University_Drylab/6_June_2008 6]
| [http://2008.igem.org/Newcastle_University_Drylab/7_June_2008 7]
| [http://2008.igem.org/Newcastle_University_Drylab/8_June_2008 8]
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| [http://2008.igem.org/Newcastle_University_Drylab/9_June_2008 9]
| [http://2008.igem.org/Newcastle_University_Drylab/10_June_2008 10]
| [http://2008.igem.org/Newcastle_University_Drylab/11_June_2008 11]
| [http://2008.igem.org/Newcastle_University_Drylab/12_June_2008 12]
| [http://2008.igem.org/Newcastle_University_Drylab/13_June_2008 13]
| [http://2008.igem.org/Newcastle_University_Drylab/14_June_2008 14]
| [http://2008.igem.org/Newcastle_University_Drylab/15_June_2008 15]
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| [http://2008.igem.org/Newcastle_University_Drylab/16_June_2008 16]
| [http://2008.igem.org/Newcastle_University_Drylab/17_June_2008 17]
| [http://2008.igem.org/Newcastle_University_Drylab/18_June_2008 18]
| [http://2008.igem.org/Newcastle_University_Drylab/19_June_2008 19]
| [http://2008.igem.org/Newcastle_University_Drylab/20_June_2008 20]
| [http://2008.igem.org/Newcastle_University_Drylab/21_June_2008 21]
| [http://2008.igem.org/Newcastle_University_Drylab/22_June_2008 22]
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| [http://2008.igem.org/Newcastle_University_Drylab/23_June_2008 23]
| [http://2008.igem.org/Newcastle_University_Drylab/24_June_2008 24]
| [http://2008.igem.org/Newcastle_University_Drylab/25_June_2008 25]
| [http://2008.igem.org/Newcastle_University_Drylab/26_June_2008 26]
| [http://2008.igem.org/Newcastle_University_Drylab/27_June_2008 27]
| [http://2008.igem.org/Newcastle_University_Drylab/28_June_2008 28]
| [http://2008.igem.org/Newcastle_University_Drylab/29_June_2008 29]
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| [http://2008.igem.org/Newcastle_University_Drylab/30_June_2008 30]
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| July
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| [http://2008.igem.org/Newcastle_University_Drylab/1_July_2008 1]
| [http://2008.igem.org/Newcastle_University_Drylab/2_July_2008 2]
| [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/3_July_2008&action=edit 3]
| [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/4_July_2008&action=edit 4]
| [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/5_July_2008&action=edit 5]
| [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/6_July_2008&action=edit 6]
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| [http://2008.igem.org/Newcastle_University_Drylab/7_July_2008 7]
| [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/8_July_2008&action=edit 8]
| [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/9_July_2008&action=edit 9]
| [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/10_July_2008&action=edit 10]
| [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/11_July_2008&action=edit 11]
| [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/12_July_2008&action=edit 12]
| [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/13_July_2008&action=edit 13]
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| [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/14_July_2008&action=edit 14]
| [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/15_July_2008&action=edit 15]
| [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/16_July_2008&action=edit 16]
| [http://2008.igem.org/Newcastle_University_Drylab/17_July_2008 17]
| [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/18_July_2008&action=edit 18]
| [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/19_July_2008&action=edit 19]
| [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/20_July_2008&action=edit 20]
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| [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/21_July_2008&action=edit 21]
| [http://2008.igem.org/Newcastle_University_Drylab/22_July_2008 22]
| [http://2008.igem.org/Newcastle_University_Drylab/23_July_2008 23]
| [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/24_July_2008&action=edit 24]
| [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/25_July_2008&action=edit 25]
| [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/26_July_2008&action=edit 26]
| [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/27_July_2008&action=edit 27]
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| [http://2008.igem.org/Newcastle_University_Drylab/28_July_2008 28]
| [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/29_July_2008&action=edit 29]
| [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/30_July_2008&action=edit 30]
| [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/31_July_2008&action=edit 31]
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| August
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| [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/1_August_2008&action=edit 1]
| [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/2_August_2008&action=edit 2]
| [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/3_August_2008&action=edit 3]
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| [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/4_August_2008&action=edit 4]
| [http://2008.igem.org/Newcastle_University_Drylab/5_August_2008 5]
| [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/6_August_2008&action=edit 6]
| [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/7_August_2008&action=edit 7]
| [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/8_August_2008&action=edit 8]
| [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/9_August_2008&action=edit 9]
| [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/10_August_2008&action=edit 10]
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| [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/11_August_2008&action=edit 11]
| [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/12_August_2008&action=edit 12]
| [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/13_August_2008&action=edit 13]
| [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/14_August_2008&action=edit 14]
| [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/15_August_2008&action=edit 15]
| [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/16_August_2008&action=edit 16]
| [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/17_August_2008&action=edit 17]
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| [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/18_August_2008&action=edit 18]
| [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/19_August_2008&action=edit 19]
| [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/20_August_2008&action=edit 20]
| [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/21_August_2008&action=edit 21]
| [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/22_August_2008&action=edit 22]
| [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/23_August_2008&action=edit 23]
| [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/24_August_2008&action=edit 24]
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| [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/25_August_2008&action=edit 25]
| [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/26_August_2008&action=edit 26]
| [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/27_August_2008&action=edit 27]
| [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/28_August_2008&action=edit 28]
| [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/29_August_2008&action=edit 29]
| [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/30_August_2008&action=edit 30]
| [http://2008.igem.org/wiki/index.php?title=Newcastle_University_Drylab/31_August_2008&action=edit 31]
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27 May 2008
Mark
Today have started coding up my evolutionary algorithm after agreeing with Matt to start coding up the structure. The network will map two inputs to two outputs via three hidden layer nodes. Each node is represented as an array of boolean arrays, therefore for each layer there is an array, with an element for each node. Each element contains a duoble array which contains a selection of double values that will make up the threshold value and weights for each node. These will be input by the user.
At this stage the structure of the network is being coded in, tomorrow I will start working on the functionality. I finished the plan for the network overall earlier today. The network will run two input values mapped to two output values, and the network will be trained to do this based on learning and the weights that it can vary. I wrote some pseudocode for the start of the structural programming and this is shown below:
public class neuralNetwork {
public static void main(String[] args)
{
//declare number of nodes (1st array size) for each array
//declare size of double arrays (2nd array size) for each array
//Read in values for all variables to date using Sanner object (re-use)
//declare input array(array of double arrays)
//declare hidden layer array
//declare output array
//enter range of values inte the double arrays for weights
//for (each node)
{
for(each element of double array)
{
Using input stream scanner object enter range of weights
}
//last value is the threshold value - entered seperately
}}
This has been hard coded today.The next step is to add some functionality. This will involve designing methods that mutate and change node weights, and implementing a fitness function.
Also continued reading into Listeria organism - located a couple of new quorum sening targets - worth discussing.
Megan
Morgan
Nina
"
