Newcastle University Drylab/6 June 2008

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6 June 2008

Mark

Went to the meeting for the research group and went throught the cellML tutorial.

Then went through the CellML tutorial myself, and started to plan how to do part composite models. It is going to be very important to plan interfaces with Nina as she will be planning the constraint models and I will be assembling the part models together to create a composite model based on these constraints.

Got some logos sent through - sent them round for feedback. Then did some mnore user stories. Then e-mailed Jan-Willem about the coshh and the availability and cost of the strains we are planning to use.


Megan

Carried out analysis of all of the other 2-component systems in S.pneumoniae to find one that is suitable, as there problems with vnc.

Worked through the cellML tutorials


Morgan

Spent all day trying to persuade Maven to install on my laptop. Rrrgh. Downloaded the CellML 1.1 Spec and JAXB plugin for Maven. Want to tackle Todo #1 above.


Nina

CellML Practise

I attended the CellML tutorial meeting presented by Neil.

Then after lunch did all three cellML tutorials.

Finally emailed Jan-Willem about sensor-FP BioBricks. The team and I are planning to make our first BioBrick using the two component system of B. cereus and fluorescent proteins.