The Standardistation

In the first edition of the newsletter, it elaborated a method similar to the approach our characterization procedure. We have decided to make use of the protocol given to us, however with some minor modifications.

Transformation of parts

The parts transformed are:

1. LacI-GFP [http://partsregistry.org/wiki/index.php?title=Part:BBa_I763004 BBa_I763004],
2. Standard promoter with GFP reporter [http://partsregistry.org/Part:BBa_I20260 BBa_I20260]
3. GFP reporter devices with Weak promoter[http://partsregistry.org/Part:BBa_J23150 BBa_J23150],
4. Medium promoter [http://partsregistry.org/Part:BBa_J23151 BBa_J23151] and
5. Strong promoter [http://partsregistry.org/Part:BBa_J23102 BBa_J23102]

Discussion

With the parts transformed, we can proceed with the characterization based on the protocol we constructed. We make use of the FLx800™ Fluorescence Microplate Reader to take the readings of the fluorescence that is emitted by the GFP reporting devices by measuring the relative fluorescence units (RFU). The different strength of the promoters associated with the same GFP reporting device, E0240 will determine the rate of transcription of the GFP protein. The stronger the promoter, the higher is the rate of its transcription. This results in more GFP proteins formed which in turns relates to more fluorescence being emitted. This direct proportionality brings us closer to quantifying the strength of any promoter of interest. Hence a standard promoter was used to compare the RFU with other promoters. Based on the newsletter, there are also the Low, Medium and High promoters.

Results

We transformed all these parts and take their readings over 12 hours at 10 minutes intervals. The graphs below illustrates the results we obtained and the detailed data points and graphs plotting can be retrieved from the File:NTU@iGEM Results for characterization 010708.xls.

Characterization Graph of parts over 12 hours

Characterization Graph of parts after 3 hours

Characterization Graph of parts after 3.5 hours