Team:Chiba/Calendar-Home/20 August 2008
From 2008.igem.org
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===Team:Input=== | ===Team:Input=== | ||
'''[[Team:Chiba/protocol/PCR|PCR]]''' | '''[[Team:Chiba/protocol/PCR|PCR]]''' | ||
- | *[http://partsregistry.org/Part:BBa_J22136 BBa_J22136](2007) | + | *[http://partsregistry.org/Part:BBa_J22136 BBa_J22136](2007)(1) |
- | *[http://partsregistry.org/Part:BBa_J22136 BBa_J22136](2008) | + | *[http://partsregistry.org/Part:BBa_J22136 BBa_J22136](2008)(2) |
- | *[http://partsregistry.org/Part:BBa_J22141 BBa_J22141](2007) | + | *[http://partsregistry.org/Part:BBa_J22141 BBa_J22141](2007)(3) |
- | *[http://partsregistry.org/Part:BBa_J22141 BBa_J22141](2008) | + | *[http://partsregistry.org/Part:BBa_J22141 BBa_J22141](2008)(4) |
- | *[http://partsregistry.org/Part:BBa_E0612 BBa_E0612](2008) | + | *[http://partsregistry.org/Part:BBa_E0612 BBa_E0612](2008)(5) |
<table width="250" border="4" cellpadding="0" cellspacing="0" bordercolor="#000000"> | <table width="250" border="4" cellpadding="0" cellspacing="0" bordercolor="#000000"> | ||
<tr> | <tr> | ||
<td width="257">Sample No.</td> | <td width="257">Sample No.</td> | ||
- | <td> | + | <td>1</td><td>2</td><td>3</td><td>4</td><td>5</td> |
</tr> | </tr> | ||
<tr> | <tr> | ||
- | <td>DNA tamplate</td> | + | <td>DNA tamplate(μL)</td> |
- | <td>1</td><td>1</td><td>1</td><td>1</td | + | <td>1</td><td>1</td><td>1</td><td>1</td><td>1</td> |
</tr> | </tr> | ||
<tr> | <tr> | ||
- | <td>FW primer</td> | + | <td>FW primer(μL)</td> |
<td>5</td><td>5</td><td>5</td><td>5</td><td>5</td> | <td>5</td><td>5</td><td>5</td><td>5</td><td>5</td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
- | <td>VR primer</td> | + | <td>VR primer(μL)</td> |
<td>5</td><td>5</td><td>5</td><td>5</td><td>5</td> | <td>5</td><td>5</td><td>5</td><td>5</td><td>5</td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
- | <td>dNTPmix</td> | + | <td>dNTPmix(μL)</td> |
<td>10</td><td>10</td><td>10</td><td>10</td><td>10</td> | <td>10</td><td>10</td><td>10</td><td>10</td><td>10</td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
- | <td>thermo pol buffer</td> | + | <td>thermo pol buffer(μL)</td> |
<td>10</td><td>10</td><td>10</td><td>10</td><td>10</td> | <td>10</td><td>10</td><td>10</td><td>10</td><td>10</td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
- | <td>DNA pol(VENT)</td> | + | <td>DNA pol(VENT)(μL)</td> |
<td>1</td><td>1</td><td>1</td><td>1</td><td>1</td> | <td>1</td><td>1</td><td>1</td><td>1</td><td>1</td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
- | <td>dH<sub>2</sub>O</td> | + | <td>dH<sub>2</sub>O(μL)</td> |
<td>68</td><td>68</td><td>68</td><td>68</td><td>68</td> | <td>68</td><td>68</td><td>68</td><td>68</td><td>68</td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
- | <td>TOTAL</td> | + | <td>TOTAL(μL)</td> |
<td>100</td><td>100</td><td>100</td><td>100</td><td>100</td> | <td>100</td><td>100</td><td>100</td><td>100</td><td>100</td> | ||
</tr> | </tr> | ||
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<tr> | <tr> | ||
<td width="257">Sample No.</td> | <td width="257">Sample No.</td> | ||
- | <td> | + | <td>1</td><td>2</td><td>3</td><td>4</td><td>5</td> |
</tr> | </tr> | ||
<tr> | <tr> | ||
<td>Sample DNA</td> | <td>Sample DNA</td> | ||
- | <td>1</td><td>1</td><td>1</td><td>1</td | + | <td>1</td><td>1</td><td>1</td><td>1</td><td>1</td> |
</tr> | </tr> | ||
<tr> | <tr> | ||
- | <td>loading dye</td> | + | <td>loading dye(μL)</td> |
<td>1</td><td>1</td><td>1</td><td>1</td><td>1</td> | <td>1</td><td>1</td><td>1</td><td>1</td><td>1</td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
- | <td>dH<sub>2</sub>O</td> | + | <td>dH<sub>2</sub>O(μL)</td> |
<td>4</td><td>4</td><td>4</td><td>4</td><td>4</td> | <td>4</td><td>4</td><td>4</td><td>4</td><td>4</td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
- | <td>Total</td> | + | <td>Total(μL)</td> |
<td>6</td><td>6</td><td>6</td><td>6</td><td>6</td> | <td>6</td><td>6</td><td>6</td><td>6</td><td>6</td> | ||
</tr> | </tr> | ||
Line 77: | Line 77: | ||
</table> | </table> | ||
- | --> | + | -->1,2,3,4,5:none |
'''[[Team:Chiba/protocol/transformation|Transformation]]''' | '''[[Team:Chiba/protocol/transformation|Transformation]]''' | ||
Line 86: | Line 86: | ||
*[http://partsregistry.org/Part:BBa_J06650 BBa_J06650](2006) | *[http://partsregistry.org/Part:BBa_J06650 BBa_J06650](2006) | ||
*[http://partsregistry.org/Part:BBa_J22136 BBa_J22136](2007) | *[http://partsregistry.org/Part:BBa_J22136 BBa_J22136](2007) | ||
- | *[http://partsregistry.org/Part:BBa_J22141 BBa_J22141](2007) | + | *[http://partsregistry.org/Part:BBa_J22141 BBa_J22141](2007)-->only one colony |
- | + | ||
- | --> | + | |
- | + | ||
- | + | ||
===Team:Communication=== | ===Team:Communication=== | ||
:(18/8)--->'''[[Team:Chiba/protocol/DNA Purification/sigma|Mini prep]]''' | :(18/8)--->'''[[Team:Chiba/protocol/DNA Purification/sigma|Mini prep]]''' | ||
- | ::* | + | ::*[http://partsregistry.org/Part:BBa_C0070 BBa_C0070](2007) |
- | ::* | + | ::*[http://partsregistry.org/Part:BBa_C0070 BBa_C0070](2006) |
- | ::* | + | ::*[http://partsregistry.org/Part:BBa_C0076 BBa_C0076](2007) |
- | ::* | + | ::*[http://partsregistry.org/Part:BBa_C0078 BBa_C0078](2007) |
- | ::* | + | ::*[http://partsregistry.org/Part:BBa_C0078 BBa_C0078](2006) |
- | ::* | + | ::*[http://partsregistry.org/Part:BBa_C0170 BBa_C0170](2007) |
- | ::* | + | ::*[http://partsregistry.org/Part:BBa_C0170 BBa_C0170](2006) |
- | ::* | + | ::*[http://partsregistry.org/Part:BBa_C0178 BBa_C0178](2007) |
- | ::* | + | ::*[http://partsregistry.org/Part:BBa_C0178 BBa_C0178](2006) |
Line 119: | Line 115: | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
- | <td> | + | <td>dH<sub>2</sub>O</td> |
<td>7</td> | <td>7</td> | ||
</tr> | </tr> | ||
Line 129: | Line 125: | ||
:From left; | :From left; | ||
- | ::* | + | ::*[http://partsregistry.org/Part:BBa_C0076 BBa_C0076](2007) -> None |
- | ::* | + | ::*[http://partsregistry.org/Part:BBa_C0078 BBa_C0078](2007) -> None |
- | ::* | + | ::*[http://partsregistry.org/Part:BBa_C0078 BBa_C0078](2006) -> None |
|} | |} | ||
Line 149: | Line 145: | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
- | <td> | + | <td>dH<sub>2</sub>O</td> |
<td>10</td> | <td>10</td> | ||
</tr> | </tr> | ||
Line 159: | Line 155: | ||
:From left; | :From left; | ||
- | ::* | + | ::*[http://partsregistry.org/Part:BBa_C0078 BBa_C0078](2007) -> None |
- | ::* | + | ::*[http://partsregistry.org/Part:BBa_C0078 BBa_C0078](2006) -> OK |
- | ::* | + | ::*[http://partsregistry.org/Part:BBa_C0076 BBa_C0076](2007) -> None |
- | ::* | + | ::*[http://partsregistry.org/Part:BBa_C0070 BBa_C0070](2007) -> OK |
- | ::* | + | ::*[http://partsregistry.org/Part:BBa_C0070 BBa_C0070](2006) -> OK |
|} | |} | ||
Line 182: | Line 178: | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
- | <td> | + | <td>dH<sub>2</sub>O</td> |
<td>7</td> | <td>7</td> | ||
</tr> | </tr> | ||
Line 192: | Line 188: | ||
:From left;<br> | :From left;<br> | ||
- | ::* | + | ::*[http://partsregistry.org/Part:BBa_C0170 BBa_C0170](2007) -> OK |
- | ::* | + | ::*[http://partsregistry.org/Part:BBa_C0170 BBa_C0170](2006) -> OK |
- | ::* | + | ::*[http://partsregistry.org/Part:BBa_C0178 BBa_C0178](2007) -> OK |
- | ::* | + | ::*[http://partsregistry.org/Part:BBa_C0178 BBa_C0178](2006) -> OK |
|} | |} | ||
--->'''[[Team:Chiba/protocol/digestion|Digestion test]]''' | --->'''[[Team:Chiba/protocol/digestion|Digestion test]]''' | ||
- | ::* | + | ::*[http://partsregistry.org/Part:BBa_C0170 BBa_C0170](2007) |
- | ::* | + | ::*[http://partsregistry.org/Part:BBa_C0170 BBa_C0170](2006) |
- | ::* | + | ::*[http://partsregistry.org/Part:BBa_C0178 BBa_C0178](2007) |
- | ::* | + | ::*[http://partsregistry.org/Part:BBa_C0178 BBa_C0178](2006) |
<table width="315" border="2" cellpadding="0" cellspacing="0" bordercolor="#000000"> | <table width="315" border="2" cellpadding="0" cellspacing="0" bordercolor="#000000"> | ||
Line 211: | Line 207: | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
- | <td> | + | <td>[http://partsregistry.org/Part:BBa_C0170 BBa_C0170](2006)</td> |
<td>3</td><td>-</td><td>-</td><td>-</td><td>3</td><td>-</td><td>-</td><td>-</td> | <td>3</td><td>-</td><td>-</td><td>-</td><td>3</td><td>-</td><td>-</td><td>-</td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
- | <td> | + | <td>[http://partsregistry.org/Part:BBa_C0170 BBa_C0170](2007)</td> |
<td>-</td><td>3</td><td>-</td><td>-</td><td>-</td><td>3</td><td>-</td><td>-</td> | <td>-</td><td>3</td><td>-</td><td>-</td><td>-</td><td>3</td><td>-</td><td>-</td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
- | <td> | + | <td>[http://partsregistry.org/Part:BBa_C0178 BBa_C0178](2006)</td> |
<td>-</td><td>-</td><td>3</td><td>-</td><td>-</td><td>-</td><td>3</td><td>-</td> | <td>-</td><td>-</td><td>3</td><td>-</td><td>-</td><td>-</td><td>3</td><td>-</td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
- | <td> | + | <td>[http://partsregistry.org/Part:BBa_C0178 BBa_C0178](2007)</td> |
<td>-</td><td>-</td><td>-</td><td>3</td><td>-</td><td>-</td><td>-</td><td>3</td> | <td>-</td><td>-</td><td>-</td><td>3</td><td>-</td><td>-</td><td>-</td><td>3</td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
- | <td> | + | <td>EcoRI</td> |
<td>0.1</td><td>0.1</td><td>0.1</td><td>0.1</td><td>0.1</td><td>0.1</td><td>0.1</td><td>0.1</td> | <td>0.1</td><td>0.1</td><td>0.1</td><td>0.1</td><td>0.1</td><td>0.1</td><td>0.1</td><td>0.1</td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
- | <td> | + | <td>PstI</td> |
<td>-</td><td>-</td><td>-</td><td>-</td><td>0.1</td><td>0.1</td><td>0.1</td><td>0.1</td> | <td>-</td><td>-</td><td>-</td><td>-</td><td>0.1</td><td>0.1</td><td>0.1</td><td>0.1</td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
- | <td>Buffer | + | <td>Buffer EcoRI</td> |
<td>1</td><td>1</td><td>1</td><td>1</td><td>1</td><td>1</td><td>1</td><td>1</td> | <td>1</td><td>1</td><td>1</td><td>1</td><td>1</td><td>1</td><td>1</td><td>1</td> | ||
</tr> | </tr> | ||
Line 243: | Line 239: | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
- | <td> | + | <td>dH<sub>2</sub>O</td> |
<td>4.9</td><td>4.9</td><td>4.9</td><td>4.9</td><td>4.8</td><td>4.8</td><td>4.8</td><td>4.8</td> | <td>4.9</td><td>4.9</td><td>4.9</td><td>4.9</td><td>4.8</td><td>4.8</td><td>4.8</td><td>4.8</td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
<td>TOTAL</td> | <td>TOTAL</td> | ||
- | <td> | + | <td>10μL</td><td>10μL</td><td>10μL</td><td>10μL</td><td>10μL</td><td>10μL</td><td>10μL</td><td>10μL</td> |
</tr> | </tr> | ||
</table> | </table> | ||
Line 268: | Line 264: | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
- | <td> | + | <td>dH<sub>2</sub>O</td> |
<td>7</td> | <td>7</td> | ||
</tr> | </tr> | ||
Line 278: | Line 274: | ||
:From left; | :From left; | ||
:(Single Digestion 1~4) | :(Single Digestion 1~4) | ||
- | ::* | + | ::*[http://partsregistry.org/Part:BBa_C0170 BBa_C0170](2006) -> OK |
- | ::* | + | ::*[http://partsregistry.org/Part:BBa_C0170 BBa_C0170](2007) -> OK |
- | ::* | + | ::*[http://partsregistry.org/Part:BBa_C0178 BBa_C0178](2006) -> OK |
- | ::* | + | ::*[http://partsregistry.org/Part:BBa_C0178 BBa_C0178](2007) -> OK |
:(Double Digestion 1~4) | :(Double Digestion 1~4) | ||
- | ::* | + | ::*[http://partsregistry.org/Part:BBa_C0170 BBa_C0170](2006) -> OK |
- | ::* | + | ::*[http://partsregistry.org/Part:BBa_C0170 BBa_C0170](2007) -> OK |
- | ::* | + | ::*[http://partsregistry.org/Part:BBa_C0178 BBa_C0178](2006) -> OK |
- | ::* | + | ::*[http://partsregistry.org/Part:BBa_C0178 BBa_C0178](2007) -> OK |
|} | |} | ||
- | |||
- | |||
- | |||
- | |||
===Team:Output=== | ===Team:Output=== | ||
[[Team:Chiba/protocol/transformation|Transformation]] | [[Team:Chiba/protocol/transformation|Transformation]] | ||
- | *[http://partsregistry.org/Part:BBa_J52008 BBa_J52008]( | + | *[http://partsregistry.org/Part:BBa_J52008 BBa_J52008](2007)-->colony |
- | *[http://partsregistry.org/Part:BBa_I712019 BBa_I712019]( | + | *[http://partsregistry.org/Part:BBa_I712019 BBa_I712019](2008)-->no colony |
- | *[http://partsregistry.org/Part:BBa_J33202 BBa_J33202]( | + | *[http://partsregistry.org/Part:BBa_J33202 BBa_J33202](2007)-->colony |
- | *[http://partsregistry.org/Part:BBa_E2030 BBa_E2030]( | + | *[http://partsregistry.org/Part:BBa_E2030 BBa_E2030](2007)-->not so good |
- | *YFP(P-GEX)-->colony | + | *YFP(P-GEX)-->colony(Amp) |
- | *[http://partsregistry.org/Part:BBa_F2620 BBa_F2620]-->colony | + | *[http://partsregistry.org/Part:BBa_F2620 BBa_F2620](2007)-->colony |
- | *[http://partsregistry.org/Part:BBa_T9002 BBa_T9002]-->colony | + | *[http://partsregistry.org/Part:BBa_T9002 BBa_T9002](2007)-->colony |
- | + | ||
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Latest revision as of 05:57, 30 October 2008
19 August 2008 <|> 21 August 2008
Contents |
Laboratory work
Team:Input
- [http://partsregistry.org/Part:BBa_J22136 BBa_J22136](2007)(1)
- [http://partsregistry.org/Part:BBa_J22136 BBa_J22136](2008)(2)
- [http://partsregistry.org/Part:BBa_J22141 BBa_J22141](2007)(3)
- [http://partsregistry.org/Part:BBa_J22141 BBa_J22141](2008)(4)
- [http://partsregistry.org/Part:BBa_E0612 BBa_E0612](2008)(5)
Sample No. | 1 | 2 | 3 | 4 | 5 |
DNA tamplate(μL) | 1 | 1 | 1 | 1 | 1 |
FW primer(μL) | 5 | 5 | 5 | 5 | 5 |
VR primer(μL) | 5 | 5 | 5 | 5 | 5 |
dNTPmix(μL) | 10 | 10 | 10 | 10 | 10 |
thermo pol buffer(μL) | 10 | 10 | 10 | 10 | 10 |
DNA pol(VENT)(μL) | 1 | 1 | 1 | 1 | 1 |
dH2O(μL) | 68 | 68 | 68 | 68 | 68 |
TOTAL(μL) | 100 | 100 | 100 | 100 | 100 |
-->Gel Check
Sample No. | 1 | 2 | 3 | 4 | 5 |
Sample DNA | 1 | 1 | 1 | 1 | 1 |
loading dye(μL) | 1 | 1 | 1 | 1 | 1 |
dH2O(μL) | 4 | 4 | 4 | 4 | 4 |
Total(μL) | 6 | 6 | 6 | 6 | 6 |
-->1,2,3,4,5:none
- [http://partsregistry.org/Part:BBa_R0051 BBa_R0051](2007)
- [http://partsregistry.org/Part:BBa_R0051 BBa_R0051](2006)
- [http://partsregistry.org/Part:BBa_J06650 BBa_J06650](2007)
- [http://partsregistry.org/Part:BBa_J06650 BBa_J06650](2006)
- [http://partsregistry.org/Part:BBa_J22136 BBa_J22136](2007)
- [http://partsregistry.org/Part:BBa_J22141 BBa_J22141](2007)-->only one colony
Team:Communication
- (18/8)--->Mini prep
- [http://partsregistry.org/Part:BBa_C0070 BBa_C0070](2007)
- [http://partsregistry.org/Part:BBa_C0070 BBa_C0070](2006)
- [http://partsregistry.org/Part:BBa_C0076 BBa_C0076](2007)
- [http://partsregistry.org/Part:BBa_C0078 BBa_C0078](2007)
- [http://partsregistry.org/Part:BBa_C0078 BBa_C0078](2006)
- [http://partsregistry.org/Part:BBa_C0170 BBa_C0170](2007)
- [http://partsregistry.org/Part:BBa_C0170 BBa_C0170](2006)
- [http://partsregistry.org/Part:BBa_C0178 BBa_C0178](2007)
- [http://partsregistry.org/Part:BBa_C0178 BBa_C0178](2006)
- --->Gel Check
|
|
--->Digestion test
- [http://partsregistry.org/Part:BBa_C0170 BBa_C0170](2007)
- [http://partsregistry.org/Part:BBa_C0170 BBa_C0170](2006)
- [http://partsregistry.org/Part:BBa_C0178 BBa_C0178](2007)
- [http://partsregistry.org/Part:BBa_C0178 BBa_C0178](2006)
Sample No | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 |
[http://partsregistry.org/Part:BBa_C0170 BBa_C0170](2006) | 3 | - | - | - | 3 | - | - | - |
[http://partsregistry.org/Part:BBa_C0170 BBa_C0170](2007) | - | 3 | - | - | - | 3 | - | - |
[http://partsregistry.org/Part:BBa_C0178 BBa_C0178](2006) | - | - | 3 | - | - | - | 3 | - |
[http://partsregistry.org/Part:BBa_C0178 BBa_C0178](2007) | - | - | - | 3 | - | - | - | 3 |
EcoRI | 0.1 | 0.1 | 0.1 | 0.1 | 0.1 | 0.1 | 0.1 | 0.1 |
PstI | - | - | - | - | 0.1 | 0.1 | 0.1 | 0.1 |
Buffer EcoRI | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
BSA | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
dH2O | 4.9 | 4.9 | 4.9 | 4.9 | 4.8 | 4.8 | 4.8 | 4.8 |
TOTAL | 10μL | 10μL | 10μL | 10μL | 10μL | 10μL | 10μL | 10μL |
- --->Gel Check
|
Team:Output
- [http://partsregistry.org/Part:BBa_J52008 BBa_J52008](2007)-->colony
- [http://partsregistry.org/Part:BBa_I712019 BBa_I712019](2008)-->no colony
- [http://partsregistry.org/Part:BBa_J33202 BBa_J33202](2007)-->colony
- [http://partsregistry.org/Part:BBa_E2030 BBa_E2030](2007)-->not so good
- YFP(P-GEX)-->colony(Amp)
- [http://partsregistry.org/Part:BBa_F2620 BBa_F2620](2007)-->colony
- [http://partsregistry.org/Part:BBa_T9002 BBa_T9002](2007)-->colony