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Team:BCCS-Bristol/Modeling-To Do List
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Tgorochowski (Talk | contribs) (→Multi-threading Optimisations) |
Tgorochowski (Talk | contribs) (→Batch Processing) |
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We need to be able to run batch runs of simulations to get enough results for statistical analysis. | We need to be able to run batch runs of simulations to get enough results for statistical analysis. | ||
| - | * '''Parameter File Definition''' - | + | * '''Parameter File Definition''' - We need a simple text file defined that allows for all the parameters in the simulation and sets of bacteria, particles and boundaries defined. It should look something like this: |
| + | dskl;fjsdl | ||
| + | sdlfkjsdlkf | ||
| + | Therefore, | ||
* '''BSimBatch''' - Class to read the parameter files and run a set number of simulations, outputting videos and a data file of particle movement. | * '''BSimBatch''' - Class to read the parameter files and run a set number of simulations, outputting videos and a data file of particle movement. | ||
* '''Blue Crystal Accounts''' - Contact university about getting accounts to run some larger scale simulations | * '''Blue Crystal Accounts''' - Contact university about getting accounts to run some larger scale simulations | ||
Revision as of 08:28, 14 August 2008
Modelling To Do List
GRN Modelling
BSim Framework
Multi-threading Optimisations
Update the main computational classes to split up work into separate threads. Should improve performance when running on a single computer.
- BSimChemicalField [Done] - Update class to use worker threads when calculating the new diffusion field.
- BSimCollisionPhysics - Update class to use worker threads when calculating the force matrix.</red>
Batch Processing
We need to be able to run batch runs of simulations to get enough results for statistical analysis.
- Parameter File Definition - We need a simple text file defined that allows for all the parameters in the simulation and sets of bacteria, particles and boundaries defined. It should look something like this:
dskl;fjsdl sdlfkjsdlkf
Therefore,
- BSimBatch - Class to read the parameter files and run a set number of simulations, outputting videos and a data file of particle movement.
- Blue Crystal Accounts - Contact university about getting accounts to run some larger scale simulations
BSim Simulations
