Team:University of Lethbridge/Notebook/Project1August

From 2008.igem.org

(Difference between revisions)
m (→Selina)
m (Aug 16, 17 electroporation)
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Streaked RP1616 (from glycerol stock) onto LB plate and inoculated 5 mL LB liquid media tube with the same culture.
Streaked RP1616 (from glycerol stock) onto LB plate and inoculated 5 mL LB liquid media tube with the same culture.
Streaked glycerol stocked pSB1A7 onto LB + Amp plate - will plasmid prep to replenish pSB1A7 stock in the -20 C freezer.
Streaked glycerol stocked pSB1A7 onto LB + Amp plate - will plasmid prep to replenish pSB1A7 stock in the -20 C freezer.
 +
===August 16, 2008===
===August 16, 2008===
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     -pUC19 (positive control): 1 uL, 2.5 uL
     -pUC19 (positive control): 1 uL, 2.5 uL
  -Plated resulting cells on LB + Amp plates and left overnight at 37C
  -Plated resulting cells on LB + Amp plates and left overnight at 37C
 +
 +
====Munima====
 +
Objective: Reattempt electroporation of RP1616 with pSB1A7 and pTopp, using the same procedure (with minor modifications) as used on July 16, 2008.
 +
 +
Machine: Eppendorf Electroporator 2510
 +
 +
Protocol:
 +
1. Make a 1/5 dilution of cells from last night's culture tube into a new 5 mL LB liquid media tube. Leave dilution in shaker incubator at 37 C (300RPM) for approximately 4 hours.
 +
2. Transfer 1.5 mL of the 1/5 dilution into two microcentrifuge tubes (one for each plasmid used).
 +
3. Spin down at max for 1 minute.
 +
4. Pour off supernatant. Resuspended in 1 mL of ice cold water to wash (2x).
 +
5. Resuspend in 100 uL of 10% glycerol in water.
 +
6. Add 2 uL of plasmid. Sit for 10 min on ice.
 +
7. Poured mixture into prechilled 0.1 cm cuvette.
 +
8. Electroporate with 1.5 kV for ~2.4 msec.
 +
9. Immediately add 1 mL of SOC media.
 +
10. Transfer to 15 mL Falcon tubes.
 +
11. Shaker incubate at 300 RPM and 37 C for approximately 1 hour.
 +
12. Plate onto LB + antibiotic plates (Ours were LB + Amp; [Amp]=100 ug/mL)
 +
13. Incubate plates at 37 C for no more than 16 hours.
 +
 +
Plated 50 uL and 100 uL of each RP1616+plasmid culture.
 +
 +
Did two batches of this electroporation protocol, so had eight plates in total. For the first batch, forgot to let the cells sit for 10 min on ice before applying electric field to RP1616+pSB1A7 mixture.
 +
===August 17, 2008===
===August 17, 2008===
====Munima====
====Munima====
-
Placed plates (parafilmed) in 4C fridge after 16 hrs of 37C incubation
+
Checked plates for the results of my electroporation and Selina's chemical competency at 8am (16 hours later).
 +
 
 +
Plates from electroporation had strange tiny, mist-like dots. The LB plate with CaCl2 treated RP1616 cells (before any transformation) had normal looking growth with correct morphology. Placed plates (parafilmed) in 4C fridge.

Revision as of 20:50, 18 August 2008

Contents

August 13, 2008

Selina, Munima

Objective: Second attempt at making chemically competent RP1616 cells and transforming them with pTopp and pSB1A7.

Preparation of Chemically Competent Cells in CaCl2

Protocol (adapted from Sambrook & Russell, (2001) Molecular Cloning: A Laboratory Manual 3rd Edition. Protocol 25 Vol. 1; 1.117): 

1. Inoculated 100 mL liquid LB media using 100 uL of glycerol stocked RP1616 cells from iGEM07. Incubated at 37C
     for 4 hours. Measured A600 to be 0.666 (ideal A600 = 0.4 - 0.6).
2. Transferred cells to sterile, ice-cold 35 mL centrifuge tube (NOT FALCON TUBE). Cooled culture on ice for 
     10 minutes.
3. Pelleted cells by centrifugation at 2000 rpm for 5 min and decanted supernatant.
4. Resuspended gently, using Pasteur pipette, in 20 mL of ice-cold 80 mM MgCl2-20 mM CaCl2 solution.
5. Centrifuged cells at 2500 rpm for 5 min and decanted supernatant.
6. Resuspended cells, by gentle swirling, in 2 mL of 100 mL CaCl2.

Created one 30 % glycerol stock and two (accidentally) 50% glycerol stocks. Placed temporarily in Steve's -80C freezer in Selina's box.

___

Transformation of CaCl2 Competent Cells with Plasmid DNA

Attempted to transform pTopp and pSB1A7 (positive control) into (hopefully) CaCl2 competent RP1616 cells.

Protocol: 

1. Added plasmid solutions pTopp (5, 10 or 20 uL) or pSB1A7 (5, 10 uL)into 200 uL of chem. competent cells.
     -pTopp plasmid prep from ______, pSB1A7 from ______
2. Incubated cells on ice for 30 minutes.
3. Heat shocked cells for 2 minutes at 42 C (for 1.5 mL microcentrifuge tube).
4. Incubated on ice for 5 minutes.
5. Added 1.0 mL of pre-warmed LB media.
6. Incubated at 37 C for 60 minutes with gentle shaking (~100 rpm).
7. Pelleted cells at 6000g for 3 minutes (7000 rpm) and removed 700 uL. Resuspended the cell pellet in the remaining
     300 uL by gentle pipetting.
8. Spread the 300 uL suspension on an LB + Amp plate.
9. Incubated overnight at 37 C.


August 14, 2008

Selina

Checked transformation plates (Aug. 12, RP1616 + pTopp or pSB1A7 plasmid) after 14.5 hours.

No growth on any of the plates.


August 15, 2008

Munima

Objective: Prepare cells for electroporation/chemical competency.

Streaked RP1616 (from glycerol stock) onto LB plate and inoculated 5 mL LB liquid media tube with the same culture. Streaked glycerol stocked pSB1A7 onto LB + Amp plate - will plasmid prep to replenish pSB1A7 stock in the -20 C freezer.


August 16, 2008

Selina

Objective: Reattempt to create CaCl2 chemically competent RP1616 E. coli cells, following Sambrook's protocol directly, instead of using a modified version from the Mosimann lab

Modifications to Aug. 13 protocol: 

-Used cell culture of OD600 = 0.503
-Final resuspension of 1 mL CaCl2 per ~35 mL cells

Streaked CaCl2 treated cells on LB plate directly after competency treatment and placed at 37C overnight

Created glycerol stocks labeled 'CaCl2 treated RP1616' and placed in HJ's -80C

Selina

Objective: Test CaCl2 treated cells (Aug. 16) for competency

Used Sambrook's direct-from-CaCl2-treatment transformation protocol.

Volumes used for transformations: 

-100 mL CaCl2 cell suspension per transformation
-Varying amounts of plasmid solution (Sambrook advises <5% of cell culture volume and max 25ng/50mL cell culture
    -pTopp: 1 uL, 2.5 uL, 5 uL
    -pSB1A7: 1 uL, 2.5 uL, 5 uL
    -pUC19 (positive control): 1 uL, 2.5 uL
-Plated resulting cells on LB + Amp plates and left overnight at 37C

Munima

Objective: Reattempt electroporation of RP1616 with pSB1A7 and pTopp, using the same procedure (with minor modifications) as used on July 16, 2008.

Machine: Eppendorf Electroporator 2510

Protocol: 

1. Make a 1/5 dilution of cells from last night's culture tube into a new 5 mL LB liquid media tube. Leave dilution in shaker incubator at 37 C (300RPM) for approximately 4 hours.
2. Transfer 1.5 mL of the 1/5 dilution into two microcentrifuge tubes (one for each plasmid used).
3. Spin down at max for 1 minute.
4. Pour off supernatant. Resuspended in 1 mL of ice cold water to wash (2x).
5. Resuspend in 100 uL of 10% glycerol in water.
6. Add 2 uL of plasmid. Sit for 10 min on ice. 
7. Poured mixture into prechilled 0.1 cm cuvette.
8. Electroporate with 1.5 kV for ~2.4 msec.
9. Immediately add 1 mL of SOC media. 
10. Transfer to 15 mL Falcon tubes.
11. Shaker incubate at 300 RPM and 37 C for approximately 1 hour.
12. Plate onto LB + antibiotic plates (Ours were LB + Amp; [Amp]=100 ug/mL)
13. Incubate plates at 37 C for no more than 16 hours.

Plated 50 uL and 100 uL of each RP1616+plasmid culture.

Did two batches of this electroporation protocol, so had eight plates in total. For the first batch, forgot to let the cells sit for 10 min on ice before applying electric field to RP1616+pSB1A7 mixture.


August 17, 2008

Munima

Checked plates for the results of my electroporation and Selina's chemical competency at 8am (16 hours later).

Plates from electroporation had strange tiny, mist-like dots. The LB plate with CaCl2 treated RP1616 cells (before any transformation) had normal looking growth with correct morphology. Placed plates (parafilmed) in 4C fridge.

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