Team:Brown/Project/Strategy

From 2008.igem.org

(Difference between revisions)
(→Overview)
(→Electrical Reporting)
 
(4 intermediate revisions not shown)
Line 1: Line 1:
{{BrownTemp}}
{{BrownTemp}}
-
==Components of auto-lysis device==
+
==Components of Auto-Lysis Device==
====Overview====
====Overview====
[[Image:Brown-lysis-cassette-explan-4.jpg|none|thumb|700px|How The System Works]]
[[Image:Brown-lysis-cassette-explan-4.jpg|none|thumb|700px|How The System Works]]
-
====Inducible promoter====  
+
====Inducible Promoter====  
-
 
+
[[Image:Arabinose20per.jpg‎|right|thumb|150px|We used Arabinose to induce the pBAD promoter on PVJ4.]]
In order to test the efficacy of the “lysis cassette,” our team first took advantage of the well-characterized pBAD promoter.  We obtained the lysis cassette from the Mekalanos lab at Harvard Medical School on the pBAD18 plasmid.
In order to test the efficacy of the “lysis cassette,” our team first took advantage of the well-characterized pBAD promoter.  We obtained the lysis cassette from the Mekalanos lab at Harvard Medical School on the pBAD18 plasmid.
In the future, the team would like to test the ability of lead, mercury, arsenic, and xylene inducible promoters to induce the lysis cassette in the presence of the respective toxins.
In the future, the team would like to test the ability of lead, mercury, arsenic, and xylene inducible promoters to induce the lysis cassette in the presence of the respective toxins.
-
====Lysis cassette====
+
====Lysis Cassette====
The lysis cassette consists of the S,R, and Rz genes under the control of a single promoter.  These genes occur naturally in the lytic bacteriophage in an overlapping cluster downstream of the promoter P’r and lead to a specifically timed lytic event in the phage’s infective cycle.  In bacteriophages, both the S105 and the S107 proteins are created, the S107 protein being an “anti-holin” that disrupts the activity of the S105 protein, the “lethal lysis effector.” The S107 gene has been deleted from the gene cassette used in experimentation.  
The lysis cassette consists of the S,R, and Rz genes under the control of a single promoter.  These genes occur naturally in the lytic bacteriophage in an overlapping cluster downstream of the promoter P’r and lead to a specifically timed lytic event in the phage’s infective cycle.  In bacteriophages, both the S105 and the S107 proteins are created, the S107 protein being an “anti-holin” that disrupts the activity of the S105 protein, the “lethal lysis effector.” The S107 gene has been deleted from the gene cassette used in experimentation.  
-
The S protein ('''S105 gene''') is a holin protein that inserts an unspecific inner membrane channel (M[r]= 8,500) in the cell membrane of the bacteria.  The S proteins accumulate within the cell and cause membrane lesions simultaneously some time after translation.  The lesion halts respiration, enables small molecules to leave the cell, and causes the cell to die (not lyse), even in the absence of an endolysin protein.   
+
'''The S protein''' ('''S105 gene''') is a holin protein that inserts an unspecific inner membrane channel (M[r]= 8,500) in the cell membrane of the bacteria.  The S proteins accumulate within the cell and cause membrane lesions simultaneously some time after translation.  The lesion halts respiration, enables small molecules to leave the cell, and causes the cell to die (not lyse), even in the absence of an endolysin protein.   
The '''R gene''' (endolysin)encodes for a soluble transglycosylase.  The S105 channels permeabilize the cell membrane to these proteins, allowing R proteins access to the periplasm.  The protein attacks the peptidoglycan of the cell wall, inducing lysis.
The '''R gene''' (endolysin)encodes for a soluble transglycosylase.  The S105 channels permeabilize the cell membrane to these proteins, allowing R proteins access to the periplasm.  The protein attacks the peptidoglycan of the cell wall, inducing lysis.
Line 22: Line 22:
The '''Rz gene''' encodes for a gene of unknown function and is not necessary for lysis in laboratory conditions unless the cell membrane is stabilized by high concentrations of divalent ions. (1)
The '''Rz gene''' encodes for a gene of unknown function and is not necessary for lysis in laboratory conditions unless the cell membrane is stabilized by high concentrations of divalent ions. (1)
-
====Electrical Reporting====
+
==Electrical Reporting==
-
Conductance of the bacterial solution before and after lysis was measured to detect the change in ionic concentration of the extracellular solution.
+
When the bacterial cells lyse, the intracellular bulk ionic content of the cells is expelled to the extra-cellular solution, thereby changing the current of the solution.  Our team used both resistance and conductance measurements to measure this change.  The method of current measurement is explained in greater detail in the "Testing" page.

Latest revision as of 15:38, 29 October 2008



Contents

Components of Auto-Lysis Device

Overview

How The System Works

Inducible Promoter

We used Arabinose to induce the pBAD promoter on PVJ4.

In order to test the efficacy of the “lysis cassette,” our team first took advantage of the well-characterized pBAD promoter. We obtained the lysis cassette from the Mekalanos lab at Harvard Medical School on the pBAD18 plasmid.

In the future, the team would like to test the ability of lead, mercury, arsenic, and xylene inducible promoters to induce the lysis cassette in the presence of the respective toxins.

Lysis Cassette

The lysis cassette consists of the S,R, and Rz genes under the control of a single promoter. These genes occur naturally in the lytic bacteriophage in an overlapping cluster downstream of the promoter P’r and lead to a specifically timed lytic event in the phage’s infective cycle. In bacteriophages, both the S105 and the S107 proteins are created, the S107 protein being an “anti-holin” that disrupts the activity of the S105 protein, the “lethal lysis effector.” The S107 gene has been deleted from the gene cassette used in experimentation.

The S protein (S105 gene) is a holin protein that inserts an unspecific inner membrane channel (M[r]= 8,500) in the cell membrane of the bacteria. The S proteins accumulate within the cell and cause membrane lesions simultaneously some time after translation. The lesion halts respiration, enables small molecules to leave the cell, and causes the cell to die (not lyse), even in the absence of an endolysin protein.

The R gene (endolysin)encodes for a soluble transglycosylase. The S105 channels permeabilize the cell membrane to these proteins, allowing R proteins access to the periplasm. The protein attacks the peptidoglycan of the cell wall, inducing lysis.

The Rz gene encodes for a gene of unknown function and is not necessary for lysis in laboratory conditions unless the cell membrane is stabilized by high concentrations of divalent ions. (1)

Electrical Reporting

When the bacterial cells lyse, the intracellular bulk ionic content of the cells is expelled to the extra-cellular solution, thereby changing the current of the solution. Our team used both resistance and conductance measurements to measure this change. The method of current measurement is explained in greater detail in the "Testing" page.

Retrieved from "http://2008.igem.org/Team:Brown/Project/Strategy"