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Team:Heidelberg/Modeling/Chemotaxis
From 2008.igem.org
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=== Simulation movies === | === Simulation movies === | ||
| - | Below is a list of simulation movies. Specific parameters can be taken from our documentation. | + | Below is a list of simulation movies. Specific parameters can be taken from our documentation. All simulations are in ogg vorbis format (see http://www.vorbis.com for help). |
* movie 1 ([https://static.igem.org/mediawiki/2008/7/7f/HD_4PDE_3D.ogg '''3D'''], [https://static.igem.org/mediawiki/2008/6/6d/HD_4PDE_2D.ogg '''2D''']) | * movie 1 ([https://static.igem.org/mediawiki/2008/7/7f/HD_4PDE_3D.ogg '''3D'''], [https://static.igem.org/mediawiki/2008/6/6d/HD_4PDE_2D.ogg '''2D''']) | ||
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** 5-PDE system | ** 5-PDE system | ||
** killer cells positioned in corner | ** killer cells positioned in corner | ||
| + | ** prey evenly distributed | ||
* movie 3 ([https://static.igem.org/mediawiki/2008/2/2f/HD_5PDE_a_0-01AI2_3D.ogg '''3D'''], [https://static.igem.org/mediawiki/2008/1/10/HD_5PDE_a_0-01AI2_2D.ogg '''2D''']) | * movie 3 ([https://static.igem.org/mediawiki/2008/2/2f/HD_5PDE_a_0-01AI2_3D.ogg '''3D'''], [https://static.igem.org/mediawiki/2008/1/10/HD_5PDE_a_0-01AI2_2D.ogg '''2D''']) | ||
** 5-PDE system | ** 5-PDE system | ||
| Line 495: | Line 496: | ||
** killer cells positioned in corner | ** killer cells positioned in corner | ||
** prey evenly distributed | ** prey evenly distributed | ||
| - | ** | + | ** 8-fold chemotactic activity towards AI-2 |
* movie 5 ([https://static.igem.org/mediawiki/2008/8/81/HD_5PDE_b_3D.ogg '''3D'''], [https://static.igem.org/mediawiki/2008/1/11/HD_5PDE_b_2D.ogg '''2D''']) | * movie 5 ([https://static.igem.org/mediawiki/2008/8/81/HD_5PDE_b_3D.ogg '''3D'''], [https://static.igem.org/mediawiki/2008/1/11/HD_5PDE_b_2D.ogg '''2D''']) | ||
** 5-PDE system | ** 5-PDE system | ||
** killer cells evenly distributed | ** killer cells evenly distributed | ||
** prey positioned in center | ** prey positioned in center | ||
Latest revision as of 22:54, 29 October 2008
Chemotaxis - Killing Model
Our detailed documentation "Spatially Resolved Modeling of Colicin-Induced Killing and Chemotactic Sensing in Escherichia Coli." includes the following information:
- Introduction into the biological sytem
- Chemotaxis model
- Parameter estimation
- Numerical methods
- Results
- Conclusions
You can download the documentation on Spatially Resolved Modeling of Colicin-Induced Killing and Chemotactic Sensing in Escherichia Coli. Further we have made a summary of the complete modeling group for non-mathematicians.
Simulation movies
Below is a list of simulation movies. Specific parameters can be taken from our documentation. All simulations are in ogg vorbis format (see http://www.vorbis.com for help).
- movie 1 (3D, 2D)
- 4-PDE system
- killer cells positioned in corner
- prey evenly distributed
- movie 2 (3D, 2D)
- 5-PDE system
- killer cells positioned in corner
- prey evenly distributed
- movie 3 (3D, 2D)
- 5-PDE system
- killer cells positioned in corner
- prey evenly distributed
- 1/1000 AI-2 production rate
- movie 4 (3D, 2D)
- 5-PDE system
- killer cells positioned in corner
- prey evenly distributed
- 8-fold chemotactic activity towards AI-2
- movie 5 (3D, 2D)
- 5-PDE system
- killer cells evenly distributed
- prey positioned in center
