Team:Paris/Modeling/Bibliography

From 2008.igem.org

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<center> <FONT size=5> '''All the parameters we might have to introduce in our models''' </FONT> <BR> </center>  
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<center> <FONT size=5> '''References''' </FONT> <BR> </center>  
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== <FONT size=5> flhDC &rarr; fliA </FONT> <BR> ==
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<br>
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* [1] Shiraz Kalir, Uri Alon. Using quantitative blueprint to reprogram the dynamics of the flagella network. Cell, June 11, 2004, Vol.117, 713-720.
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* [2] Jordi Garcia-Ojalvo, Michael B. Elowitz, Steven H. Strogratz. Modeling a synthetic multicellular clock : repressilators coupled by quorum sensing. PNAS, July 27, 204, Vol. 101, no. 30.
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* [3] Nitzan Rosenfeld, Uri Alon. Response delays and the structure of transcription networks. JMB, 2003, 329, 645-654.
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* [4] Nitzan Rosenfeld, Michael B. Elowitz, Uri Alon. Negative autoregulation speeds the response times of transcription networks. JMB, 2003, 323, 785-793.
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* [5] S.Kalir, J. McClure, K. Pabbaraju, C. Southward, M. Ronen, S. Leibler, M. G. Surette, U. Alon. Ordering genes in a flagella pathway by analysis of expression kinetics from living bacteria. Science, June 2001, Vol 292.
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* [6] http://partsregistry.org/Part:BBa_E0040
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* [7] M. Schuster, M. L. Urbanowski, and E. P. Greenberg. Promoter specificity in Pseudomonas aeruginosa quorum sensing revealed by DNA binding of purified LasR.
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* [8] Sheng Jian Cai and Masayori Inouye. EnvZ-OmpR Interaction and Osmoregulation in ''Escherichia coli''. The journal of biochemical chemistry Vol. 277, No. 27, Issue of July 5, pp. 24155–24161, 2002.
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== <FONT size=5> flhDC &rarr; fliL </FONT> <BR> ==
 
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== <FONT size=5> flhDC &rarr; flgA </FONT> <BR> ==
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<center>[[Image:Diag_expr_time.jpg]]</center>
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<center> ''expression of the fl-genes observed in'' [[Team:Paris/Modeling/Bibliography|[5]]] </center>
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== <FONT size=5> flhDC &rarr; flgB </FONT> <BR> ==
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== <FONT size=5> flhDC &rarr; flhB </FONT> <BR> ==
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== <FONT size=5> fliA &rarr; fliA </FONT> <BR> ==
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== <FONT size=5> fliA &rarr; fliL </FONT> <BR> ==
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== <FONT size=5> fliA &rarr; flgA </FONT> <BR> ==
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== <FONT size=5> fliA &rarr; flgB </FONT> <BR> ==
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== <FONT size=5> fliA &rarr; flhB </FONT> <BR> ==
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== <FONT size=5> flhDC &rarr; 0 </FONT> <BR> ==
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== <FONT size=5> fliA &rarr; 0 </FONT> <BR> ==
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== <FONT size=5> fliL &rarr; 0 </FONT> <BR> ==
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== <FONT size=5> flgA &rarr; 0 </FONT> <BR> ==
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== <FONT size=5> flgB &rarr; 0 </FONT> <BR> ==
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== <FONT size=5> flhB &rarr; 0 </FONT> <BR> ==
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== <FONT size=5> lasI &rarr; 3OC12HSL  </FONT> <BR> ==
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<FONT size=5> d[HSL]/dt = -Grad²([HSL]) </FONT> <BR>
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Latest revision as of 14:53, 21 September 2008

References


  • [1] Shiraz Kalir, Uri Alon. Using quantitative blueprint to reprogram the dynamics of the flagella network. Cell, June 11, 2004, Vol.117, 713-720.
  • [2] Jordi Garcia-Ojalvo, Michael B. Elowitz, Steven H. Strogratz. Modeling a synthetic multicellular clock : repressilators coupled by quorum sensing. PNAS, July 27, 204, Vol. 101, no. 30.
  • [3] Nitzan Rosenfeld, Uri Alon. Response delays and the structure of transcription networks. JMB, 2003, 329, 645-654.
  • [4] Nitzan Rosenfeld, Michael B. Elowitz, Uri Alon. Negative autoregulation speeds the response times of transcription networks. JMB, 2003, 323, 785-793.
  • [5] S.Kalir, J. McClure, K. Pabbaraju, C. Southward, M. Ronen, S. Leibler, M. G. Surette, U. Alon. Ordering genes in a flagella pathway by analysis of expression kinetics from living bacteria. Science, June 2001, Vol 292.
  • [6] http://partsregistry.org/Part:BBa_E0040
  • [7] M. Schuster, M. L. Urbanowski, and E. P. Greenberg. Promoter specificity in Pseudomonas aeruginosa quorum sensing revealed by DNA binding of purified LasR.
  • [8] Sheng Jian Cai and Masayori Inouye. EnvZ-OmpR Interaction and Osmoregulation in Escherichia coli. The journal of biochemical chemistry Vol. 277, No. 27, Issue of July 5, pp. 24155–24161, 2002.


Diag expr time.jpg
expression of the fl-genes observed in [5]
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