|
|
| (15 intermediate revisions not shown) |
| Line 1: |
Line 1: |
| | {{Paris/Menu}} | | {{Paris/Menu}} |
| - | {|cellspacing="5" cellpadding="10" style="background:#649CD7; width: 965px;"
| |
| - | |-valign="top"
| |
| - | |style="background:#ffffff"|
| |
| - | <center> <FONT size=5> '''All the parameters we might have to introduce in our models''' </FONT> <BR> </center>
| |
| | | | |
| - | [[Image:Diag_expr_time.jpg]]
| + | <center> <FONT size=5> '''References''' </FONT> <BR> </center> |
| - | expression of the fl-genes observed in [[Team:Paris/Modeling/Bibliography#References|[1]]]
| + | |
| | | | |
| - | == Oscillations ==
| + | <br> |
| - | <FONT size=4> see [[Team:Paris/Modeling/Oscillations|corresponding significations]]</FONT> <BR> | + | * [1] Shiraz Kalir, Uri Alon. Using quantitative blueprint to reprogram the dynamics of the flagella network. Cell, June 11, 2004, Vol.117, 713-720. |
| - | * Equation (1) : β<sub>1</sub> | + | * [2] Jordi Garcia-Ojalvo, Michael B. Elowitz, Steven H. Strogratz. Modeling a synthetic multicellular clock : repressilators coupled by quorum sensing. PNAS, July 27, 204, Vol. 101, no. 30. |
| - | * Equation (2) : β<sub>2</sub> | + | * [3] Nitzan Rosenfeld, Uri Alon. Response delays and the structure of transcription networks. JMB, 2003, 329, 645-654. |
| - | * Equation (3) : K<sub>3</sub>; n<sub>3</sub> | + | * [4] Nitzan Rosenfeld, Michael B. Elowitz, Uri Alon. Negative autoregulation speeds the response times of transcription networks. JMB, 2003, 323, 785-793. |
| - | * Equation (4) : K<sub>4</sub>; n<sub>4</sub> | + | * [5] S.Kalir, J. McClure, K. Pabbaraju, C. Southward, M. Ronen, S. Leibler, M. G. Surette, U. Alon. Ordering genes in a flagella pathway by analysis of expression kinetics from living bacteria. Science, June 2001, Vol 292. |
| - | * Equation (5) : β<sub>5</sub> | + | * [6] http://partsregistry.org/Part:BBa_E0040 |
| - | * Equation (6) : β<sub>6</sub> | + | * [7] M. Schuster, M. L. Urbanowski, and E. P. Greenberg. Promoter specificity in Pseudomonas aeruginosa quorum sensing revealed by DNA binding of purified LasR. |
| | + | * [8] Sheng Jian Cai and Masayori Inouye. EnvZ-OmpR Interaction and Osmoregulation in ''Escherichia coli''. The journal of biochemical chemistry Vol. 277, No. 27, Issue of July 5, pp. 24155–24161, 2002. |
| | | | |
| - | == FIFO ==
| |
| | | | |
| - | == Synchronisation ==
| + | <center>[[Image:Diag_expr_time.jpg]]</center> |
| - | | + | <center> ''expression of the fl-genes observed in'' [[Team:Paris/Modeling/Bibliography|[5]]] </center> |
| - | == <center> '''References''' </center> ==
| + | |
| - | | + | |
| - | [1] ''Ordering Genes in a Flagella Pathway by Analysis of Expression Kinetics from Living Bacteria'' <br>
| + | |
| - | S. Kalir, J. McClure, K. Pabbaraju, C. Southward, M. Ronen, S. Leibler, M. G. Surette, U. Alon, <br>
| + | |
| - | [2] ''Using a Quantitative Blueprint to Reprogram the Dynamics of the Flagella Gene Network' <br>'
| + | |
| - | Shiraz Kalir and Uri Alon
| + | |
| - | |}<br style="clear:both" /> | + | |
References
- [1] Shiraz Kalir, Uri Alon. Using quantitative blueprint to reprogram the dynamics of the flagella network. Cell, June 11, 2004, Vol.117, 713-720.
- [2] Jordi Garcia-Ojalvo, Michael B. Elowitz, Steven H. Strogratz. Modeling a synthetic multicellular clock : repressilators coupled by quorum sensing. PNAS, July 27, 204, Vol. 101, no. 30.
- [3] Nitzan Rosenfeld, Uri Alon. Response delays and the structure of transcription networks. JMB, 2003, 329, 645-654.
- [4] Nitzan Rosenfeld, Michael B. Elowitz, Uri Alon. Negative autoregulation speeds the response times of transcription networks. JMB, 2003, 323, 785-793.
- [5] S.Kalir, J. McClure, K. Pabbaraju, C. Southward, M. Ronen, S. Leibler, M. G. Surette, U. Alon. Ordering genes in a flagella pathway by analysis of expression kinetics from living bacteria. Science, June 2001, Vol 292.
- [6] http://partsregistry.org/Part:BBa_E0040
- [7] M. Schuster, M. L. Urbanowski, and E. P. Greenberg. Promoter specificity in Pseudomonas aeruginosa quorum sensing revealed by DNA binding of purified LasR.
- [8] Sheng Jian Cai and Masayori Inouye. EnvZ-OmpR Interaction and Osmoregulation in Escherichia coli. The journal of biochemical chemistry Vol. 277, No. 27, Issue of July 5, pp. 24155–24161, 2002.
expression of the fl-genes observed in [5]
|
"
