"

 

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Revision as of 16:51, 4 August 2008 (view source) Audrey (Talk | contribs) (→Parts Submitted n°2) ← Older edit		Latest revision as of 06:48, 30 October 2008 (view source) Romain.rousseau (Talk | contribs)
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-	{{Paris/Menu}}	+	{{:Team:Paris/MenuBackup}}
-	{|cellspacing="5" cellpadding="10" style="background:#649CD7; width: 965px;"	+
-	|-valign="top"	+
-	|style="background:#ffffff"|	+
		+	[[Team:Paris/Parts2|Not in the registry]]
		+	=Parts Submitted to the Registery=
		+	==Basic Parts==
		+	===[[Image:Part_icon_regulatory.png]] Regulatory===
-	== Parts Submitted n°1 ==	+	====Promoter of fliL gene from ''E.coli'' flagella====
		+	*[http://partsregistry.org/Part:BBa_K136000 BBa_K136000]
		+	*Sequencing : NO
		+	*References :
		+	[1] Kalir S, McClure J, Pabbaraju K, Southward C, Ronen M, Leibler S, Surette MG, Alon U. Ordering genes in a flagella pathway by analysis of expression kinetics from living bacteria. Science. 2001 Jun 15;292(5524):2080-3.
-	*	+	[2] Shiraz Kalir, Uri Alon. Using quantitative blueprint to reprogram the dynamics of the flagella network. Cell, June 11, 2004, Vol.117, 713-720
-	[[Image:Part_icon_regulatory.png]][[Image:icon_coding.png]][[Image:Part_icon_reporter.png]][[Image:Part_icon_terminator.png]] with[[Image:Part_icon_rbs.png]]?	+	[3] Kalir S, Mangan S, Alon U. A coherent feed-forward loop with a SUM input function prolongs flagella expression in Escherichia coli. Mol Syst Biol. 2005;1:2005.0006. Epub 2005 Mar 29.
-	pFliL--OmpR	+	====Promoter of flgA gene from ''E. coli'' flagella====
		+	*[http://partsregistry.org/Part:BBa_K136001 BBa_K136001]
		+	*Sequencing : OK
		+	*References :
		+	[1] Kalir S, McClure J, Pabbaraju K, Southward C, Ronen M, Leibler S, Surette MG, Alon U. Ordering genes in a flagella pathway by analysis of expression kinetics from living bacteria. Science. 2001 Jun 15;292(5524):2080-3.
		+	[2] Shiraz Kalir, Uri Alon. Using quantitative blueprint to reprogram the dynamics of the flagella network. Cell, June 11, 2004, Vol.117, 713-720
-	*	+	[3] Kalir S, Mangan S, Alon U. A coherent feed-forward loop with a SUM input function prolongs flagella expression in Escherichia coli. Mol Syst Biol. 2005;1:2005.0006. Epub 2005 Mar 29.
-	[[Image:Part_icon_regulatory.png]][[Image:icon_coding.png]][[Image:Part_icon_rbs.png]][[Image:Part_icon_reporter.png]][[Image:Part_icon_terminator.png]]	+	====Promoter of flgB gene from ''E. coli'' flagella====
		+	*[http://partsregistry.org/Part:BBa_K136002 BBa_K136002]
		+	*Sequencing : NO
		+	*References :
		+	[1] Kalir S, McClure J, Pabbaraju K, Southward C, Ronen M, Leibler S, Surette MG, Alon U. Ordering genes in a flagella pathway by analysis of expression kinetics from living bacteria. Science. 2001 Jun 15;292(5524):2080-3.
-	pFliL--EnvZ	+	[2] Shiraz Kalir, Uri Alon. Using quantitative blueprint to reprogram the dynamics of the flagella network. Cell, June 11, 2004, Vol.117, 713-720
-	== Parts Submitted n°2 ==	+	[3] Kalir S, Mangan S, Alon U. A coherent feed-forward loop with a SUM input function prolongs flagella expression in Escherichia coli. Mol Syst Biol. 2005;1:2005.0006. Epub 2005 Mar 29.
		+	====Promoter of flhB gene from ''E. coli'' flagella====
		+	*[http://partsregistry.org/Part:BBa_K136003 BBa_K136003]
		+	*Sequencing : NO
		+	*References :
		+	[1] Kalir S, McClure J, Pabbaraju K, Southward C, Ronen M, Leibler S, Surette MG, Alon U. Ordering genes in a flagella pathway by analysis of expression kinetics from living bacteria. Science. 2001 Jun 15;292(5524):2080-3.
-	*	+	[2] Shiraz Kalir, Uri Alon. Using quantitative blueprint to reprogram the dynamics of the flagella network. Cell, June 11, 2004, Vol.117, 713-720
-	[[Image:Part_icon_regulatory.png]][[Image:icon_coding.png]][[Image:Part_icon_reporter.png]][[Image:Part_icon_terminator.png]] with  [[Image:Part_icon_rbs.png]] ?	+	[3] Kalir S, Mangan S, Alon U. A coherent feed-forward loop with a SUM input function prolongs flagella expression in Escherichia coli. Mol Syst Biol. 2005;1:2005.0006. Epub 2005 Mar 29.
		+	====Promoter of flhDC gene from ''E. coli'' flagella====
		+	*[http://partsregistry.org/Part:BBa_K136004 BBa_K136004]
		+	*Sequencing : NO
		+	*References :
		+	[1] Kalir S, McClure J, Pabbaraju K, Southward C, Ronen M, Leibler S, Surette MG, Alon U. Ordering genes in a flagella pathway by analysis of expression kinetics from living bacteria. Science. 2001 Jun 15;292(5524):2080-3.
-	pTet--FlhDC	+	[2] Shiraz Kalir, Uri Alon. Using quantitative blueprint to reprogram the dynamics of the flagella network. Cell, June 11, 2004, Vol.117, 713-720
		+	[3] Kalir S, Mangan S, Alon U. A coherent feed-forward loop with a SUM input function prolongs flagella expression in Escherichia coli. Mol Syst Biol. 2005;1:2005.0006. Epub 2005 Mar 29.
-	[[Image:Part_icon_regulatory.png]][[Image:icon_coding.png]][[Image:Part_icon_reporter.png]][[Image:Part_icon_terminator.png]] with  [[Image:Part_icon_rbs.png]] ?	+	=Parts not Submitted to the Registery=
		+	===[[Image:Icon_coding.png]] Protein coding===
		+	====FlhDC gene from ''E.coli'' flagella with natural RBS====
		+	*[http://partsregistry.org/Part:BBa_K136005 BBa_K136005]
-	pLas--FlhDC	+	====Coding sequence for FliA with RBS====
		+	====Coding sequence for FlhDC without RBS====
		+	====Coding sequence for FliA without RBS====
		+	====Coding sequence for EnvZ*====
		+	====Coding sequence for OmpR*====
-		+	==Intermediate Constructions==
-		+	==Finished Constructions==
-		+
-		+
-	*	+
-		+
-	[[Image:Part_icon_regulatory.png]][[Image:icon_coding.png]][[Image:Part_icon_terminator.png]],  with[[Image:Part_icon_reporter.png]] ? ,  [[Image:Part_icon_rbs.png]] ?	+
-		+
-	pFliA--FliA	+
-		+
-	[[Image:Part_icon_regulatory.png]][[Image:icon_coding.png]][[Image:Part_icon_terminator.png]],  with[[Image:Part_icon_reporter.png]] ? ,  [[Image:Part_icon_rbs.png]] ?	+
-		+
-	pLac--FliA	+
-		+
-	[[Image:Part_icon_regulatory.png]][[Image:icon_coding.png]][[Image:Part_icon_terminator.png]],  with[[Image:Part_icon_reporter.png]] ? ,  [[Image:Part_icon_rbs.png]] ?	+
-		+
-	pTet--FliA	+
-		+
-		+
-		+
-		+
-	*	+
-		+
-	[[Image:Part_icon_regulatory.png]][[Image:Part_icon_rbs.png]][[Image:Part_icon_reporter.png]][[Image:Part_icon_terminator.png]]	+
-		+
-	pFliL	+
-		+
-	[[Image:Part_icon_regulatory.png]][[Image:Part_icon_rbs.png]][[Image:Part_icon_reporter.png]][[Image:Part_icon_terminator.png]]	+
-		+
-	pFlgA	+
-		+
-	[[Image:Part_icon_regulatory.png]][[Image:Part_icon_rbs.png]][[Image:Part_icon_reporter.png]][[Image:Part_icon_terminator.png]]	+
-		+
-	pFlgB	+
-		+
-	[[Image:Part_icon_regulatory.png]][[Image:Part_icon_rbs.png]][[Image:Part_icon_reporter.png]][[Image:Part_icon_terminator.png]]	+
-		+
-	pFlhB	+
-		+
-		+
-		+
-		+
-	*	+
-	[[Image:Part_icon_regulatory.png]][[Image:Part_icon_rbs.png]][[Image:icon_coding.png]][[Image:Part_icon_rbs.png]][[Image:Part_icon_reporter.png]][[Image:Part_icon_terminator.png]]	+
-		+
-	pFliL------------TetR	+
-		+
-	[[Image:Part_icon_regulatory.png]][[Image:Part_icon_rbs.png]][[Image:icon_coding.png]][[Image:Part_icon_rbs.png]][[Image:Part_icon_reporter.png]][[Image:Part_icon_terminator.png]]	+
-		+
-	pFlgA------------TetR	+
-		+
-	[[Image:Part_icon_regulatory.png]][[Image:Part_icon_rbs.png]][[Image:icon_coding.png]][[Image:Part_icon_rbs.png]][[Image:Part_icon_reporter.png]][[Image:Part_icon_terminator.png]]	+
-		+
-	pFlgB------------TetR	+
-		+
-	[[Image:Part_icon_regulatory.png]][[Image:Part_icon_rbs.png]][[Image:icon_coding.png]][[Image:Part_icon_rbs.png]][[Image:Part_icon_reporter.png]][[Image:Part_icon_terminator.png]]	+
-		+
-	pFlhB------------TetR	+
-		+
-		+
-		+
-		+
-	*	+
-	[[Image:Part_icon_regulatory.png]][[Image:icon_coding.png]][[Image:Part_icon_rbs.png]][[Image:Part_icon_reporter.png]][[Image:Part_icon_terminator.png]]	+
-		+
-	pFliL--OmpR	+
-		+
-	:or EnvZ'	+
-		+
-	[[Image:Part_icon_regulatory.png]][[Image:icon_coding.png]][[Image:Part_icon_rbs.png]][[Image:Part_icon_reporter.png]][[Image:Part_icon_terminator.png]]	+
-		+
-	pFlgA--OmpR	+
-		+
-	:or EnvZ'	+
-		+
-	[[Image:Part_icon_regulatory.png]][[Image:icon_coding.png]][[Image:Part_icon_rbs.png]][[Image:Part_icon_reporter.png]][[Image:Part_icon_terminator.png]]	+
-		+
-	pFlgB--OmpR	+
-		+
-	:or EnvZ'	+
-		+
-		+
-	[[Image:Part_icon_regulatory.png]][[Image:icon_coding.png]][[Image:Part_icon_rbs.png]][[Image:Part_icon_reporter.png]][[Image:Part_icon_terminator.png]]	+
-		+
-	pFlhD--OmpR	+
-		+
-	:or EnvZ'	+
-		+
-	== Parts Submitted n°3 ==	+
-		+
-	*	+
-		+
-	constitutive promoter +/- strong (J23101-->J23109)	+
-		+
-	[[Image:Part_icon_regulatory.png]][[Image:Part_icon_rbs.png]][[Image:icon_coding.png]][[Image:Part_icon_terminator.png]]	+
-		+
-	p const-LasR	+
-		+
-	[[Image:Part_icon_regulatory.png]][[Image:Part_icon_rbs.png]][[Image:icon_coding.png]][[Image:Part_icon_terminator.png]]	+
-		+
-	pLac--LasR	+
-		+
-	[[Image:Part_icon_regulatory.png]][[Image:Part_icon_rbs.png]][[Image:icon_coding.png]][[Image:Part_icon_terminator.png]]	+
-		+
-	pBad--LasR	+
-		+
-		+
-		+
-		+
-	*	+
-		+
-	[[Image:Part_icon_regulatory.png]][[Image:Part_icon_rbs.png]][[Image:icon_coding.png]][[Image:Part_icon_terminator.png]]	+
-		+
-	pFliL------------LasI	+
-		+
-	[[Image:Part_icon_regulatory.png]][[Image:Part_icon_rbs.png]][[Image:icon_coding.png]][[Image:Part_icon_terminator.png]]	+
-		+
-	pFlgB-----------LasI	+
-		+
-	[[Image:Part_icon_regulatory.png]][[Image:Part_icon_rbs.png]][[Image:icon_coding.png]][[Image:Part_icon_terminator.png]]	+
-		+
-	pFlgA-----------LasI	+
-		+
-	[[Image:Part_icon_regulatory.png]][[Image:Part_icon_rbs.png]][[Image:icon_coding.png]][[Image:Part_icon_terminator.png]]	+
-		+
-	pFlhB-----------LasI	+
-		+
-		+
-		+
-		+
-	*	+
-		+
-	[[Image:Part_icon_regulatory.png]][[Image:icon_coding.png]][[Image:Part_icon_rbs.png]][[Image:Part_icon_reporter.png]][[Image:Part_icon_terminator.png]]	+
-		+
-	pLas--OmpR	+
-		+
-	[[Image:Part_icon_regulatory.png]][[Image:icon_coding.png]][[Image:Part_icon_rbs.png]][[Image:Part_icon_reporter.png]][[Image:Part_icon_terminator.png]]	+
-		+
-	pLas--EnvZ'	+
-		+
-	[[Image:Part_icon_regulatory.png]][[Image:Part_icon_rbs.png]][[Image:icon_coding.png]][[Image:Part_icon_rbs.png]][[Image:Part_icon_reporter.png]][[Image:Part_icon_terminator.png]]	+
-		+
-	pLas------------TetR	+
-		+
-		+
-		+
-		+
-	*	+
-		+
-	[[Image:Part_icon_regulatory.png]][[Image:Part_icon_rbs.png]][[Image:icon_coding.png]][[Image:Part_icon_rbs.png]][[Image:Part_icon_reporter.png]][[Image:Part_icon_terminator.png]]	+
-		+
-	pFliL------------LasI	+
-		+
-	[[Image:Part_icon_regulatory.png]][[Image:Part_icon_rbs.png]][[Image:icon_coding.png]][[Image:Part_icon_rbs.png]][[Image:Part_icon_reporter.png]][[Image:Part_icon_terminator.png]]	+
-		+
-	pFlgB------------LasI	+
-		+
-	[[Image:Part_icon_regulatory.png]][[Image:Part_icon_rbs.png]][[Image:icon_coding.png]][[Image:Part_icon_rbs.png]][[Image:Part_icon_reporter.png]][[Image:Part_icon_terminator.png]]	+
-		+
-	pFlgA------------LasI	+
-		+
-	[[Image:Part_icon_regulatory.png]][[Image:Part_icon_rbs.png]][[Image:icon_coding.png]][[Image:Part_icon_rbs.png]][[Image:Part_icon_reporter.png]][[Image:Part_icon_terminator.png]]	+
-		+
-	pFlhB------------LasI	+

---

Latest revision as of 06:48, 30 October 2008

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Not in the registry

Contents 1 Parts Submitted to the Registery 1.1 Basic Parts 1.1.1 Regulatory 1.1.1.1 Promoter of fliL gene from E.coli flagella 1.1.1.2 Promoter of flgA gene from E. coli flagella 1.1.1.3 Promoter of flgB gene from E. coli flagella 1.1.1.4 Promoter of flhB gene from E. coli flagella 1.1.1.5 Promoter of flhDC gene from E. coli flagella 2 Parts not Submitted to the Registery 2.1 Protein coding 2.1.1 FlhDC gene from E.coli flagella with natural RBS 2.1.2 Coding sequence for FliA with RBS 2.1.3 Coding sequence for FlhDC without RBS 2.1.4 Coding sequence for FliA without RBS 2.1.5 Coding sequence for EnvZ* 2.1.6 Coding sequence for OmpR* 2.2 Intermediate Constructions 2.3 Finished Constructions

Parts Submitted to the Registery

Basic Parts

Regulatory

Promoter of fliL gene from E.coli flagella

• [http://partsregistry.org/Part:BBa_K136000 BBa_K136000]
• Sequencing : NO
• References :

[1] Kalir S, McClure J, Pabbaraju K, Southward C, Ronen M, Leibler S, Surette MG, Alon U. Ordering genes in a flagella pathway by analysis of expression kinetics from living bacteria. Science. 2001 Jun 15;292(5524):2080-3.

[2] Shiraz Kalir, Uri Alon. Using quantitative blueprint to reprogram the dynamics of the flagella network. Cell, June 11, 2004, Vol.117, 713-720

[3] Kalir S, Mangan S, Alon U. A coherent feed-forward loop with a SUM input function prolongs flagella expression in Escherichia coli. Mol Syst Biol. 2005;1:2005.0006. Epub 2005 Mar 29.

Promoter of flgA gene from E. coli flagella

• [http://partsregistry.org/Part:BBa_K136001 BBa_K136001]
• Sequencing : OK
• References :

[1] Kalir S, McClure J, Pabbaraju K, Southward C, Ronen M, Leibler S, Surette MG, Alon U. Ordering genes in a flagella pathway by analysis of expression kinetics from living bacteria. Science. 2001 Jun 15;292(5524):2080-3.

[2] Shiraz Kalir, Uri Alon. Using quantitative blueprint to reprogram the dynamics of the flagella network. Cell, June 11, 2004, Vol.117, 713-720

[3] Kalir S, Mangan S, Alon U. A coherent feed-forward loop with a SUM input function prolongs flagella expression in Escherichia coli. Mol Syst Biol. 2005;1:2005.0006. Epub 2005 Mar 29.

Promoter of flgB gene from E. coli flagella

• [http://partsregistry.org/Part:BBa_K136002 BBa_K136002]
• Sequencing : NO
• References :

[1] Kalir S, McClure J, Pabbaraju K, Southward C, Ronen M, Leibler S, Surette MG, Alon U. Ordering genes in a flagella pathway by analysis of expression kinetics from living bacteria. Science. 2001 Jun 15;292(5524):2080-3.

[2] Shiraz Kalir, Uri Alon. Using quantitative blueprint to reprogram the dynamics of the flagella network. Cell, June 11, 2004, Vol.117, 713-720

[3] Kalir S, Mangan S, Alon U. A coherent feed-forward loop with a SUM input function prolongs flagella expression in Escherichia coli. Mol Syst Biol. 2005;1:2005.0006. Epub 2005 Mar 29.

Promoter of flhB gene from E. coli flagella

• [http://partsregistry.org/Part:BBa_K136003 BBa_K136003]
• Sequencing : NO
• References :

[1] Kalir S, McClure J, Pabbaraju K, Southward C, Ronen M, Leibler S, Surette MG, Alon U. Ordering genes in a flagella pathway by analysis of expression kinetics from living bacteria. Science. 2001 Jun 15;292(5524):2080-3.

[2] Shiraz Kalir, Uri Alon. Using quantitative blueprint to reprogram the dynamics of the flagella network. Cell, June 11, 2004, Vol.117, 713-720

[3] Kalir S, Mangan S, Alon U. A coherent feed-forward loop with a SUM input function prolongs flagella expression in Escherichia coli. Mol Syst Biol. 2005;1:2005.0006. Epub 2005 Mar 29.

Promoter of flhDC gene from E. coli flagella

• [http://partsregistry.org/Part:BBa_K136004 BBa_K136004]
• Sequencing : NO
• References :

[1] Kalir S, McClure J, Pabbaraju K, Southward C, Ronen M, Leibler S, Surette MG, Alon U. Ordering genes in a flagella pathway by analysis of expression kinetics from living bacteria. Science. 2001 Jun 15;292(5524):2080-3.

[2] Shiraz Kalir, Uri Alon. Using quantitative blueprint to reprogram the dynamics of the flagella network. Cell, June 11, 2004, Vol.117, 713-720

[3] Kalir S, Mangan S, Alon U. A coherent feed-forward loop with a SUM input function prolongs flagella expression in Escherichia coli. Mol Syst Biol. 2005;1:2005.0006. Epub 2005 Mar 29.

Parts not Submitted to the Registery

Protein coding

FlhDC gene from E.coli flagella with natural RBS

• [http://partsregistry.org/Part:BBa_K136005 BBa_K136005]

Coding sequence for FliA with RBS

Coding sequence for FlhDC without RBS

Coding sequence for FliA without RBS

Coding sequence for EnvZ*

Coding sequence for OmpR*

Intermediate Constructions

Finished Constructions

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