Team:Alberta NINT/Notebook/catchall

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!align="center"|[[Team:Alberta_NINT|Home]]
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!align="center"|[[Team:Alberta_NINT/Team|The Team]]
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!align="center"|[[Team:Alberta_NINT/Project|The Project]]
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!align="center"|[[Team:Alberta_NINT/Parts|Bits and Pieces]]
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!align="center"|[[Team:Alberta_NINT/Modeling|Modeling]]
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!align="center"|[[Team:Alberta_NINT/Notebook|Notebook]]
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<br><br><br>
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== '''General Announcements''' ==
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In case no one has seen the link on facebook... we should probably change our team/project name.  "Compu-coli: Adventures in Organic Logic" probably won't fare well when they see that the U of Waterloo team with the half-adder project called theirs "Compucoli".  Maybe we can rename it "Computing coli: Adventures in Organic Logic"?
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<br><br>^----Oh dang, it was too catchy to not have already been used I guess.  IMHO, since the whole logic gate thing has been done, the difference with this project is with the coupling together of the gates to build the full adder, and then maybe couple the full adders together.  The coupled together adders are called (I think) a Ripple Carry Adder, so maybe that could be tweaked into something like "The Ripple Coli Adder: Adventures in Organic Logic".  Which sounds aprox 121% more lame than it did in my head.  :S
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Thought that something like this might come in handy rather than hunting through emails or the calendar notebook for stuff like meeting times etc.
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BTW meeting on next monday?
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== Fundraising==
 
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<br><br>
 
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== Computer Nonsense ==
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If anyone needs a C++ compiler, I've been using Dev-C++ from Bloodshed software  (http://www.bloodshed.net/devcpp.html), mainly because its free and the name sounds pretty cool.
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{| style="color:#FFFFFF;background-color:#000066;" cellpadding="3" cellspacing="1" border="1" bordercolor="#fff" width="750px" align="center"
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!align="center"|[[Team:Alberta_NINT|<span title="Home">Home</span>]]
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!align="center"|[[Team:Alberta_NINT/Team|<span title="The Team">The Team</span>]]
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!align="center"|[[Team:Alberta_NINT/Project|<span title="Project Logi-col[i]">The Project</span>]]
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!align="center"|[[Team:Alberta_NINT/Protocols|<span title="Lab Protocols">Lab Protocols</span>]]
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!align="center"|[[Team:Alberta_NINT/Parts|<span title="Constructed Parts">Bits and Pieces</span>]]
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!align="center"|[[Team:Alberta_NINT/Modeling|<span title="Modeling and Downloadable Materials">Modeling</span>]]
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!align="center"|[[Team:Alberta_NINT/Notebook|<span title="Notebook">Notebook</span>]]
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[[Image:NINTiGEM_Header2.jpg|center|750px]]<br><br>
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Things I figure need to be looked at in order to make a few of the desired changes (a work in progress):<br>
 
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BifoldView.ccp
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[[Team:Alberta_NINT/Notebook| < Back to Notebook]]
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Line 30<br>
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Line 73 (add support for more sequences)
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== '''General Announcements''' ==
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Weekly meetings are Mondays 4:00 pm sharp in CSC 2-49 from now until ... forever.
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<br>
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[[Team:Alberta_NINT/Notebook/Synthetic_Biology_4|<span title="Synthetic Biology 4.0 Photos!">Synthetic Biology 4.0 Photos!</span>]]
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<br>
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== Fundraising==
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The OnSequenceEvents (we'll need another button or two or three, as well as to create the event handlers for them, which should theoretically be about the same as whats already there but with higher numbers)
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== Computer Nonsense ==
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Around line 273, the code checks to see if all the input sequences are alright, and that there are enough of them.  Strangely enough, the program won't let you proceed from this point with only one sequence input.<br><br>
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UNAFold and RNAstructure don't really seem to agree when bimolecular folds are used.  UnW00t.
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Line 273 starts some interesting stuff, looks like this is where those I's get shoved between the sequences.  I tried to shove the III into sequences before they are loaded, but the program doesn't like that too much.  When using single strands, it locks up, and when trying it on bimolecular mode (one sequence with a group of I and the other without, theoretically giving you your trimolecular fold) it says that a sequence is unrecognizable.
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Line 349 sets up the progress bar
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UNAFold FrontEnd had the last of its major features finished today.  It can finally be put somewheres for general use I suppose.  Minor features/improvements/bugfixes should ensue.
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Line 407, actual function call?
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== Wiki things ==
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Anyways, somebody else should look at this, I'm probably out to lunch.  Maybe we could try taking out the checks that cause it to say that a sequence is not recognizable, and see then we could see if would it do a bunch of bits that way (thus making the program a bit more usable for the purposes of the project, and providing a little more time to 'pretty it up')<br>
 
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<br>May 29th
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I drew up a new version of our Logi-col[i] friend.  Now all I need is some advice on whether it is possible to color him in on the computer and if so, how to do it.  Here he is:
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Turns out that AfxBeginThread isn't a function. Its really the program starting another thread.
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[[Image:Alberta_NINT_logi-coli_friend.jpg|250 px]]===========>
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<br>In line 523 of structure.cpp is the openseq function.  Adding a couple of lines in there would allow us to bypass the "function not recognized" part, which may allow us to sneak in extra sequences easily.  This may or may not work.  In the process of figuring out how to make my computer compile this so this theory can be tested.
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[[Image:Alberta_NINT_logicoli.jpg|250px]]
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I thought I had a good picture in my mind of what it was supposed to look like before I went and drew it up, but I guess not.  I have the photoshop file with all the layers preserved, so changing things should be relatively easy.
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Aww yay! -SD
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== Wiki things ==
 
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<!---  old stuff
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oh the logo on the first page is so cute with it's lopsided, one-bigger-than-the-other eyes.. and it's cape.. and it's abbacus.
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<center>[[Image:NINT_giftest_8.gif|GifTest]]</center><br>
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Tried out some animating of gifs.  Needs artistic talent and proper exporting
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--- James, I like it. -SD
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Updated the lab protocols page... that was a lot of work.
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Pdf'd the meeting minutes and added them to the wiki.  I thought there were more meetings than that, so if anyone sees that they're missing, feel free to add it or point it out. -James
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--- James, the only meetings we don't have minutes up for is the first meeting March 20 and then May 5.  I don't have any from these meetings - does anyone know if we ever made minutes for these meetings? -SD
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<b>@SD:</b> I thought there looked like there were too few...  I don't have these ones either. -James
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Made the notebook such that each page has a "back to notebook", "previous entry", "next entry" links.  Please make sure that you make each new page with the appropriate links! -SD
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--->
== Science/Lab stuff ==
== Science/Lab stuff ==
<br><br>
<br><br>

Latest revision as of 03:29, 30 October 2008


Home The Team The Project Lab Protocols Bits and Pieces Modeling Notebook


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< Back to Notebook


Contents

General Announcements

Weekly meetings are Mondays 4:00 pm sharp in CSC 2-49 from now until ... forever.

Synthetic Biology 4.0 Photos!


Fundraising



Computer Nonsense



UNAFold and RNAstructure don't really seem to agree when bimolecular folds are used. UnW00t.

UNAFold FrontEnd had the last of its major features finished today. It can finally be put somewheres for general use I suppose. Minor features/improvements/bugfixes should ensue.

Wiki things



I drew up a new version of our Logi-col[i] friend. Now all I need is some advice on whether it is possible to color him in on the computer and if so, how to do it. Here he is:
Alberta NINT logi-coli friend.jpg===========> Alberta NINT logicoli.jpg
I thought I had a good picture in my mind of what it was supposed to look like before I went and drew it up, but I guess not. I have the photoshop file with all the layers preserved, so changing things should be relatively easy.

Aww yay! -SD



Science/Lab stuff



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