Team:Heidelberg/Modeling/Chemotaxis

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Latest revision as of 22:54, 29 October 2008

Chemotaxis - Killing Model

Our detailed documentation "Spatially Resolved Modeling of Colicin-Induced Killing and Chemotactic Sensing in Escherichia Coli." includes the following information:

Introduction into the biological sytem
Chemotaxis model
Parameter estimation
Numerical methods
Results
Conclusions

You can download the documentation on Spatially Resolved Modeling of Colicin-Induced Killing and Chemotactic Sensing in Escherichia Coli. Further we have made a summary of the complete modeling group for non-mathematicians.

Simulation movies

Below is a list of simulation movies. Specific parameters can be taken from our documentation. All simulations are in ogg vorbis format (see http://www.vorbis.com for help).

movie 1 (3D, 2D)
- 4-PDE system
- killer cells positioned in corner
- prey evenly distributed
movie 2 (3D, 2D)
- 5-PDE system
- killer cells positioned in corner
- prey evenly distributed
movie 3 (3D, 2D)
- 5-PDE system
- killer cells positioned in corner
- prey evenly distributed
- 1/1000 AI-2 production rate
movie 4 (3D, 2D)
- 5-PDE system
- killer cells positioned in corner
- prey evenly distributed
- 8-fold chemotactic activity towards AI-2
movie 5 (3D, 2D)
- 5-PDE system
- killer cells evenly distributed
- prey positioned in center

@@ Line 464: / Line 464: @@
-==Chemotaxis - Killing Model==
+== Chemotaxis - Killing Model ==
-On this page you can find a brief summary of the whole modeling part of our team. If you are interested in more details such as numerical methods, parameter estimation and simulation results, you can take a look at our detailed documentation "Model for Sensing Network and the Production of Colicins as the Killing Mechanism".
+Our detailed documentation "Spatially Resolved Modeling of Colicin-Induced Killing and Chemotactic Sensing in ''Escherichia Coli''." includes the following information:
+* Introduction into the biological sytem
+* Chemotaxis model
+* Parameter estimation
+* Numerical methods
+* Results
+* Conclusions
+You can download the documentation on [[Media:Documentation_Sensing_Colicin.pdf|Spatially Resolved Modeling of Colicin-Induced Killing and Chemotactic Sensing in ''Escherichia Coli'']]. Further we have made a [[Media:Summary.pdf|summary]] of the complete modeling group for non-mathematicians.
+=== Simulation movies ===
+Below is a list of simulation movies. Specific parameters can be taken from our documentation. All simulations are in ogg vorbis format (see http://www.vorbis.com for help).
+* movie 1 ([https://static.igem.org/mediawiki/2008/7/7f/HD_4PDE_3D.ogg '''3D'''], [https://static.igem.org/mediawiki/2008/6/6d/HD_4PDE_2D.ogg '''2D'''])
+** 4-PDE system
+** killer cells positioned in corner
+** prey evenly distributed
+* movie 2 ([https://static.igem.org/mediawiki/2008/f/f8/HD_5PDE_a_3D.ogg '''3D'''], [https://static.igem.org/mediawiki/2008/8/8a/HD_5PDE_a_2D.ogg '''2D'''])
+** 5-PDE system
+** killer cells positioned in corner
+** prey evenly distributed
+* movie 3 ([https://static.igem.org/mediawiki/2008/2/2f/HD_5PDE_a_0-01AI2_3D.ogg '''3D'''], [https://static.igem.org/mediawiki/2008/1/10/HD_5PDE_a_0-01AI2_2D.ogg '''2D'''])
+** 5-PDE system
+** killer cells positioned in corner
+** prey evenly distributed
+** 1/1000 AI-2 production rate
+* movie 4 ([https://static.igem.org/mediawiki/2008/1/15/HD_5PDE_a_4-fold-chemotaxis_3D.ogg '''3D'''], [https://static.igem.org/mediawiki/2008/9/9b/HD_5PDE_a_4-fold-chemotaxis_2D.ogg '''2D'''])
+** 5-PDE system
+** killer cells positioned in corner
+** prey evenly distributed
+** 8-fold chemotactic activity towards AI-2
+* movie 5 ([https://static.igem.org/mediawiki/2008/8/81/HD_5PDE_b_3D.ogg '''3D'''], [https://static.igem.org/mediawiki/2008/1/11/HD_5PDE_b_2D.ogg '''2D'''])
+** 5-PDE system
+** killer cells evenly distributed
+** prey positioned in center