Project
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- | <td width=" | + | <td width="521" nowrap="nowrap" bgcolor="#03438A"><img src="https://static.igem.org/mediawiki/igem.org/2/28/Logonew2.jpg" width="473" height="120" /></td> |
- | <td width=" | + | <td width="442" height="54" valign="bottom" nowrap="nowrap" bgcolor="#03438A" id="logo"><img src="https://static.igem.org/mediawiki/2008/f/fc/Logonew1.jpg" width="340" height="120" /><a href="https://2008.igem.org/Team:Tianjin" class="STYLE1"><span class="STYLE3">Home</span></a></td> |
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<td height="59" colspan="2" bgcolor="#03438A" class="subHeader"><p align="center" class="STYLE3" style="margin-bottom: 0">PROJECT 2 </p> | <td height="59" colspan="2" bgcolor="#03438A" class="subHeader"><p align="center" class="STYLE3" style="margin-bottom: 0">PROJECT 2 </p> | ||
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- | <td | + | <td><img src="https://static.igem.org/mediawiki/2008/b/b9/Hounan.jpg" width="410" height="321"></td> |
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- | <td><img src="https://static.igem.org/mediawiki/2008/9/9e/Hounasna.jpg" width=" | + | <td><img src="https://static.igem.org/mediawiki/2008/9/9e/Hounasna.jpg" width="413" height="336"></td> |
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- | + | <td><span class="STYLE25"><span class="STYLE28"><a href="https://2008.igem.org/B22222">Background</a></span></span></td> | |
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+ | </table></td> | ||
<td width="487" height="41" bgcolor="#03438A" class="sidebarHeader STYLE5 STYLE4 STYLE12">Our Design </td> | <td width="487" height="41" bgcolor="#03438A" class="sidebarHeader STYLE5 STYLE4 STYLE12">Our Design </td> | ||
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<p>When adding Arabinose/AHL different genes will get expressed behind the two mutually-repressive promoters. That means when added into the culture, AHL will diffuse into the cell bind the LuxR protein and form a complex which can activate the LuxPr promoter and then the genes of rhII capR and araC will express. Then the AraC protein will bind to the PBad/araC promoter and repress the expression of the aiiA and another capR gene. However, you can turn the switch to the other side by adding Arobinose. When adding Arobinose into the culture, the repression functional molecular AraC protein will get released from the PBad/AraC promoter. With the expression of the aiiA gene the signal molecular will get digested and therefore decrease to a proper level which is not high enough to activate the LuxPr promoter.<br> | <p>When adding Arabinose/AHL different genes will get expressed behind the two mutually-repressive promoters. That means when added into the culture, AHL will diffuse into the cell bind the LuxR protein and form a complex which can activate the LuxPr promoter and then the genes of rhII capR and araC will express. Then the AraC protein will bind to the PBad/araC promoter and repress the expression of the aiiA and another capR gene. However, you can turn the switch to the other side by adding Arobinose. When adding Arobinose into the culture, the repression functional molecular AraC protein will get released from the PBad/AraC promoter. With the expression of the aiiA gene the signal molecular will get digested and therefore decrease to a proper level which is not high enough to activate the LuxPr promoter.<br> | ||
The most important thing in this section is the capacity of the two different promoters luxPr and PBad/araC are quite different. When the luxRr promoter is activated, its higher capacity will express more chloromycetin resistant protein and another important thing is by sensing the AHL which is sent out by cell 2 it can produce another kind of signal molecular BHL.<br> | The most important thing in this section is the capacity of the two different promoters luxPr and PBad/araC are quite different. When the luxRr promoter is activated, its higher capacity will express more chloromycetin resistant protein and another important thing is by sensing the AHL which is sent out by cell 2 it can produce another kind of signal molecular BHL.<br> | ||
- | + | Cell 2 is similarly designed as Cell 1</p> | |
- | + | </td> | |
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</table> | </table> | ||
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<td colspan="2" bgcolor="#03438A"><p><strong><span class="STYLE7">Mutualism and </span></strong><span class="STYLE1">Competition</span></p></td> | <td colspan="2" bgcolor="#03438A"><p><strong><span class="STYLE7">Mutualism and </span></strong><span class="STYLE1">Competition</span></p></td> | ||
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<embed src="https://static.igem.org/mediawiki/2008/8/8a/Arobinosq3e2e.swf" width="609" height="507" quality="high" pluginspage="http://www.macromedia.com/go/getflashplayer" type="application/x-shockwave-flash" bgcolor="#03438A"></embed> | <embed src="https://static.igem.org/mediawiki/2008/8/8a/Arobinosq3e2e.swf" width="609" height="507" quality="high" pluginspage="http://www.macromedia.com/go/getflashplayer" type="application/x-shockwave-flash" bgcolor="#03438A"></embed> | ||
</object></td> | </object></td> | ||
- | <td width="408" bgcolor="#03438A"><p class=" | + | <td width="408" bgcolor="#03438A"><p class="STYLE7"><strong>Competition</strong></p> |
<p class="STYLE15"> In the culture that both ampicillin and chloromycetin are available, it requires the expression of the both resistant genes for both antibiotics for a strain’s survival. Without adding any signal molecular as the initially inducing factor into the culture, the two kinds of E.coli can not communicate with each other so they will keep on the competitive stage. In this stage each kind of cell must survive all by it self in some method as assimilating the nutrition in the culture. As a result the two different kinds of E.coli fight with each other for the space and nutrient ingredient. </p> | <p class="STYLE15"> In the culture that both ampicillin and chloromycetin are available, it requires the expression of the both resistant genes for both antibiotics for a strain’s survival. Without adding any signal molecular as the initially inducing factor into the culture, the two kinds of E.coli can not communicate with each other so they will keep on the competitive stage. In this stage each kind of cell must survive all by it self in some method as assimilating the nutrition in the culture. As a result the two different kinds of E.coli fight with each other for the space and nutrient ingredient. </p> | ||
<p class="STYLE15">By adding some AHL into the culture, the luxPr promoter will get activated by the AHL and LuxR complex. And then the expression product of the rhlI gene, BHL will diffuse into the cell 2 which can sense BHL-RhIR complex by binding to the PrhI promoter and turning on the expression of luxI kanR and lacI genes. The LacI protein will bind to the PBad/araC promoter and therefore stop the digestion of the signal molecular by the expression of the aiiA gene. At the same time the expression of the luxI gene will send out AHL. By using a very similar mechanism the cell 1 can sense the AHL molecular.</p></td> | <p class="STYLE15">By adding some AHL into the culture, the luxPr promoter will get activated by the AHL and LuxR complex. And then the expression product of the rhlI gene, BHL will diffuse into the cell 2 which can sense BHL-RhIR complex by binding to the PrhI promoter and turning on the expression of luxI kanR and lacI genes. The LacI protein will bind to the PBad/araC promoter and therefore stop the digestion of the signal molecular by the expression of the aiiA gene. At the same time the expression of the luxI gene will send out AHL. By using a very similar mechanism the cell 1 can sense the AHL molecular.</p></td> | ||
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<embed src="https://static.igem.org/mediawiki/2008/3/32/Ah11l.swf" quality="high" pluginspage="http://www.macromedia.com/go/getflashplayer" type="application/x-shockwave-flash" width="610" height="515"></embed> | <embed src="https://static.igem.org/mediawiki/2008/3/32/Ah11l.swf" quality="high" pluginspage="http://www.macromedia.com/go/getflashplayer" type="application/x-shockwave-flash" width="610" height="515"></embed> | ||
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- | <td bgcolor="#03438A"><p class="STYLE19"><strong>Mutualism</strong> < | + | <td bgcolor="#03438A"><p class="STYLE19"><span class="STYLE12"><strong>Mutualism</strong></span> </p> |
- | In this state the two kinds of cells communicate with each other by sensing the signal molecular sent by the counterpart.<br> | + | <p class="STYLE19"><br> |
- | + | In this state the two kinds of cells communicate with each other by sensing the signal molecular sent by the counterpart.<br> | |
+ | It seems that with the help of each other, both of them can live better in the harsh environment and the fact is the capacity of the LuxPr and PrhI are higher than that of the Plac and Pbad/araC promoters. With higher expression of the ampicillin and chloromycetin resistant protein both of them can survive in the ultra-high antibiotic concentration. </p></td> | ||
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</strong></span></span></td></tr> | </strong></span></span></td></tr> | ||
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- | <p><span class=" | + | <p><span class="STYLE25" style="margin-bottom: 0">This idea was inspired by the theory of Prisoner’s Dilemma. |
- | + | As in prisoners’ dilemma, the bacteria in our design are faced with two solutions for coexistence, they could either choose to cooperate with each other by providing inducers to express their partners’ antibiotics-resistance genes or they could take a foe strategy in which no cooperation is needed for both strains’ survival.</span></p> | |
</td> | </td> | ||
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<td width="477" bgcolor="#03438A"><div align="center"><span class="STYLE17"><a href="https://2008.igem.org/Experiment">Experiment</a></span> </div></td> | <td width="477" bgcolor="#03438A"><div align="center"><span class="STYLE17"><a href="https://2008.igem.org/Experiment">Experiment</a></span> </div></td> | ||
<td width="493" height="80" bgcolor="#03438A"><div align="center"><a href="https://2008.igem.org/Model" class="STYLE18">Model</a></div></td> | <td width="493" height="80" bgcolor="#03438A"><div align="center"><a href="https://2008.igem.org/Model" class="STYLE18">Model</a></div></td> | ||
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- | + | </table></td> | |
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</table> | </table> |
Revision as of 04:55, 30 October 2008
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This idea was inspired by the theory of Prisoner’s Dilemma. As in prisoners’ dilemma, the bacteria in our design are faced with two solutions for coexistence, they could either choose to cooperate with each other by providing inducers to express their partners’ antibiotics-resistance genes or they could take a foe strategy in which no cooperation is needed for both strains’ survival. |
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