Team:Paris/Modeling/Bibliography

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Revision as of 19:01, 1 August 2008

All the parameters we might have to introduce in our models

expression of the fl-genes observed in [1]

== Oscillations == see meanings of the constants

FIFO

Synchronisation

References

[1] Ordering Genes in a Flagella Pathway by Analysis of Expression Kinetics from Living Bacteria
S. Kalir, J. McClure, K. Pabbaraju, C. Southward, M. Ronen, S. Leibler, M. G. Surette, U. Alon,
[2] Using a Quantitative Blueprint to Reprogram the Dynamics of the Flagella Gene Network'
' Shiraz Kalir and Uri Alon

@@ Line 8: / Line 8: @@
 expression of the fl-genes observed in [[Team:Paris/Modeling/Bibliography#References|[1]]]
-== <FONT size=5> flhDC + fliA &rarr; pfliA &rarr; fliA &rarr; &empty; </FONT> <BR> ==
+== Oscillations == see [[Team:Paris/Modeling/Oscillations#Resulting_Equations|meanings of the constants]]
-* is the contribution of flhDC and fliA on pfliA a SUM gate
-[[Team:Paris/Modeling/Bibliography#flhDC_.2B_fliA_.E2.86.92_pfliL_.E2.86.92_Z1_.E2.86.92_.E2.88.85|(see fliL)]] ?
-* It seems that the FlhDC complex is an hexamere, as FlhD4-FlhC2.
-== <FONT size=5> flhDC + fliA &rarr; pfliL &rarr; Z1 &rarr; &empty; </FONT> <BR> ==
+== FIFO ==
+== Synchronisation ==
-the contributions of flhDC and fliA in the activity of pfliL appear to be a SUM
-[[Team:Paris/Modeling/Bibliography#References|[2]]] : <br>
-<FONT size=3> <center> act_pfliL(flhDC,fliA) = act_pfliL(flhDC,0)+act_pfliL(0,fliA) </center> </FONT> <BR> <br>
-is it the same for the other promoters under the influence of both flhDC and fliA ?
-== <FONT size=5> flhDC + fliA &rarr; pflgA &rarr; Z2 &rarr; &empty; </FONT> <BR> ==
-is the contribution of flhDC and fliA on pflgA a SUM gate
-[[Team:Paris/Modeling/Bibliography#flhDC_.2B_fliA_.E2.86.92_pfliL_.E2.86.92_Z1_.E2.86.92_.E2.88.85|(see fliL)]] ?
-== <FONT size=5> flhDC + fliA &rarr; pflgB &rarr; Z2 &rarr; &empty; </FONT> <BR> ==
-is the contribution of flhDC and fliA on pflgB a SUM gate
-[[Team:Paris/Modeling/Bibliography#flhDC_.2B_fliA_.E2.86.92_pfliL_.E2.86.92_Z1_.E2.86.92_.E2.88.85|(see fliL)]] ?
-== <FONT size=5> flhDC + fliA &rarr; pflhB &rarr; Z3 &rarr; &empty; </FONT> <BR> ==
-is the contribution of flhDC and fliA on pflhB a SUM gate
-[[Team:Paris/Modeling/Bibliography#flhDC_.2B_fliA_.E2.86.92_pfliL_.E2.86.92_Z1_.E2.86.92_.E2.88.85|(see fliL)]] ?
-== <FONT size=5> lasI &rarr; 3OC12HSL &rarr; &empty;  </FONT> <BR> ==
-== <FONT size=5> d[HSL]/dt = -D * Grad²([HSL]) </FONT> <BR> ==
-== <FONT size=5> lasR &rarr; Rec &rarr; &empty; </FONT> <BR> ==
-== <FONT size=5> 3OC12HSL + Rec  &rarr; HSL-Rec &rarr; &empty; </FONT> <BR> ==
-== <FONT size=5> HSL-Rec + pRep &rarr; TetR &rarr; &empty; </FONT> <BR> ==
-== <FONT size=5> &empty; &rarr; aTc &rarr; &empty; </FONT> <BR> ==
-== <FONT size=5> TetR + aTc &rarr; pTet &rarr; flhDC &rarr; &empty; </FONT> <BR> ==
-== <FONT size=5> OmpR* &rarr; pflhDC &rarr; flhDC &rarr; &empty; </FONT> <BR> ==
 == <center> '''References''' </center> ==